RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 PPOXP50336 477 aa13.89□□□□□ -0.19
VPS53-215ENST00000573028 ERHP84090 104 aaKnown RBP13.89□□□□□ -0.19
VPS53-215ENST00000573028 TIMM23BQ5SRD1 257 aa13.89□□□□□ -0.19
VPS53-215ENST00000573028 KCNS1Q96KK3 526 aa13.89□□□□□ -0.19
VPS53-215ENST00000573028 TXN2Q99757 166 aa13.89□□□□□ -0.19
VPS53-215ENST00000573028 DNAJC4Q9NNZ3 241 aa13.89□□□□□ -0.19
VPS53-215ENST00000573028 AMMECR1Q9Y4X0 333 aaPredicted RBP13.89□□□□□ -0.19
VPS53-215ENST00000573028 M0QZK8 103 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 ISLRO14498 428 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 APOA2P02652 100 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 GNG5P63218 68 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 SLAQ13239 276 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 DIAPH2-AS1Q14236 149 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 LCN12Q6JVE5 192 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 SLC25A48Q6ZT89 311 aaKnown RBP13.88□□□□□ -0.19
VPS53-215ENST00000573028 BLNKQ8WV28 456 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 SSBP4Q9BWG4 385 aaPredicted RBP13.88□□□□□ -0.19
VPS53-215ENST00000573028 ZNF257Q9Y2Q1 563 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 ADGRG4Q8IZF6 3080 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 MMDQ15546 238 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 C1orf174Q8IYL3 243 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 RPL8P62917 257 aaKnown RBP13.88□□□□□ -0.19
VPS53-215ENST00000573028 C2orf83Q53S99 150 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 RNF2Q99496 336 aa13.88□□□□□ -0.19
VPS53-215ENST00000573028 IGHV3-21A0A0B4J1V1 117 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 H3BTX0 84 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 ITGB1BP1O14713 200 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 TNFSF4P23510 183 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 POU2AF1Q16633 256 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 SLC25A2Q9BXI2 301 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 GOLT1BQ9Y3E0 138 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 TANC2Q9HCD6 1990 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 A0A1W2PRE2 83 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 hADV38S2A0JD32 116 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 ZNF324O75467 553 aaPredicted RBP13.87□□□□□ -0.19
VPS53-215ENST00000573028 HLA-DQA1P01909 254 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 C3orf79P0CE67 100 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 OR5B3Q8NH48 314 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 BORCS7Q96B45 105 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 PAXXQ9BUH6 204 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 DYSFO75923 2080 aa13.87□□□□□ -0.19
VPS53-215ENST00000573028 ORM2P19652 201 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 ZNF788Q6ZQV5 615 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 RBMXL3Q8N7X1 1067 aaKnown RBP13.86□□□□□ -0.19
VPS53-215ENST00000573028 LPAR2Q9HBW0 351 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 MAJINQ3KP22 176 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 C10orf113Q5VZT2 155 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 OR4B1Q8NGF8 309 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 OR1L8Q8NGR8 309 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 OR10X1Q8NGY0 326 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 FAM167A-AS1Q96KT0 104 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 IGF2BP2-AS1Q96M15 143 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 RAI1Q7Z5J4 1906 aaPredicted RBP13.86□□□□□ -0.19
VPS53-215ENST00000573028 IGHV3-72A0A0B4J1Y9 119 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 DLEU1O43261 78 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 Q6ZN92 141 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 FLYWCH2Q96CP2 140 aaKnown RBP13.86□□□□□ -0.19
VPS53-215ENST00000573028 LOXL4Q96JB6 756 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 FNDC4Q9H6D8 234 aaPredicted RBP13.86□□□□□ -0.19
VPS53-215ENST00000573028 OTOGLQ3ZCN5 2332 aa13.86□□□□□ -0.19
VPS53-215ENST00000573028 DLL1O00548 723 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 MOSP00540 346 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 PRB3Q04118 309 aaPredicted RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 TSKUQ8WUA8 353 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 FAM215AQ9Y5M1 114 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 ACACAQ13085 2346 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 IGLV3-9A0A075B6K5 115 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 SMIM27A0A1W2PRY6 76 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 MBD3L4A6NDZ8 208 aaPredicted RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 MBD3L3A6NE82 208 aaPredicted RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 DPRXA6NFQ7 191 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 MBD3L5A6NJ08 208 aaPredicted RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 FNDC10F2Z333 226 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 CORTO00230 105 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 HSBP1O75506 76 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 FTH1P19P0C7X4 201 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 OR10J3Q5JRS4 329 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 ZADH2Q8N4Q0 377 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 Q8N976 141 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 MBD3L2Q8NHZ7 208 aaPredicted RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 BET1LQ9NYM9 111 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 IZUMO1RA6ND01 250 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 ENSAO43768 121 aaKnown RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 WT1-ASQ06250 92 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 HCP5Q6MZN7 132 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 RNASEKQ6P5S7 137 aaKnown RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 FAM222BQ8WU58 562 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 MRPL36Q9P0J6 103 aaKnown RBP13.85□□□□□ -0.19
VPS53-215ENST00000573028 SH3BGRL2Q9UJC5 107 aa13.85□□□□□ -0.19
VPS53-215ENST00000573028 C19orf35Q6ZS72 473 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 A0A1W2PN81 502 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 PRB4P10163 310 aaPredicted RBP13.84□□□□□ -0.19
VPS53-215ENST00000573028 NIT1Q86X76 327 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 WFDC8Q8IUA0 241 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 NUDT10Q8NFP7 164 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 CCL17Q92583 94 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 NUDT11Q96G61 164 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 SAP30LQ9HAJ7 183 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 NDUFA4L2Q9NRX3 87 aa13.84□□□□□ -0.19
VPS53-215ENST00000573028 ARL2-SNX15V9GYD0 113 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms