RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 K7EIM0 57 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 NDUFA4O00483 81 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 YIF1AO95070 293 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 P0C879 139 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 AKR1C4P17516 323 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 ETV6P41212 452 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 NPBWR1P48145 328 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 MFAP2P55001 183 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 SRPXP78539 464 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 IZUMO4Q1ZYL8 232 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 TM4SF20Q53R12 229 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 LAMTOR1Q6IAA8 161 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 BTNL8Q6UX41 500 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 UNQ9165/PRO28630Q6UXU0 137 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 OR52B4Q8NGK2 314 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 OR52E5Q8NH55 327 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 DEDD2Q8WXF8 326 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 IL22RA2Q969J5 263 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 RCHY1Q96PM5 261 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 SOSTQ9BQB4 213 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 RBM38Q9H0Z9 239 aaKnown RBP6.12□□□□□ -1.43
VPS53-214ENST00000572607 DAZ1Q9NQZ3 744 aaKnown RBP6.12□□□□□ -1.43
VPS53-214ENST00000572607 CACNG5Q9UF02 275 aa6.12□□□□□ -1.43
VPS53-214ENST00000572607 TRAV25A0A0B4J276 109 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 RPS10-NUDT3A0A1W2PQS6 291 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 CEBPZOSA8MTT3 80 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 I3L2K1 104 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 SCAF4O95104 1147 aaKnown RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 EDN2P20800 178 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 FCGR2BP31994 310 aaPredicted RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 BMI1P35226 326 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 SPCS3P61009 180 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 KLF9Q13886 244 aaPredicted RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 TRIQKQ629K1 86 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 ADAMTSL5Q6ZMM2 481 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 TMED4Q7Z7H5 227 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 CCDC190Q86UF4 302 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 SELENOHQ8IZQ5 122 aaKnown RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 LGI3Q8N145 548 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 GLYATL2Q8WU03 294 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 GALNT14Q96FL9 552 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 SLC25A21Q9BQT8 299 aaPredicted RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 SPATA25Q9BR10 227 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 CHRDL1Q9BU40 450 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 HIPK2Q9H2X6 1198 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 HEYLQ9NQ87 328 aaPredicted RBP6.11□□□□□ -1.43
VPS53-214ENST00000572607 C19orf73Q9NVV2 129 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 NDUFA13Q9P0J0 144 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 MLXQ9UH92 298 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 TMEM56-RWDD3S4R434 201 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 V9GYH0 126 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 STAB2Q8WWQ8 2551 aa6.11□□□□□ -1.43
VPS53-214ENST00000572607 A0A0G2JRQ6 117 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 ZNF785A8K8V0 405 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 OR11H12B2RN74 326 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 K7EMT4 169 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 C8orf88P0DMB2 117 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 SULT1A3P0DMM9 295 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 SULT1A4P0DMN0 295 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 RNASE2P10153 161 aaKnown RBP6.1□□□□□ -1.43
VPS53-214ENST00000572607 OPRK1P41145 380 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 HTR2BP41595 481 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 CCR6P51684 374 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 NOXA1Q86UR1 476 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 TMEM61Q8N0U2 210 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 LHFPL5Q8TAF8 219 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 TRIM63Q969Q1 353 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 GPR146Q96CH1 333 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 GINS3Q9BRX5 216 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 SRD5A3Q9H8P0 318 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 SELENOKQ9Y6D0 94 aa6.1□□□□□ -1.43
VPS53-214ENST00000572607 SORL1Q92673 2214 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 A0A0B4J2A0 478 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 DUXBA0A1W2PPF3 345 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 NAP1L6A6NFF2 107 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 OR4C46A6NHA9 309 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 C15orf62A8K5M9 175 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 CENPXA8MT69 81 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 KRTAP9-7A8MTY7 169 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 ZNF207O43670 478 aaKnown RBP6.09□□□□□ -1.43
VPS53-214ENST00000572607 IGHV3-48P01763 117 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 CTSGP08311 255 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 CD7P09564 240 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 VAMP1P23763 118 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 TMEM187Q14656 261 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 ZNF79Q15937 498 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 MLANAQ16655 118 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 AARDQ4LEZ3 155 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 ETFRF1Q6IPR1 90 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 ZNF600Q6ZNG1 722 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 Q6ZRM9 215 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 DEFB125Q8N687 156 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 TMEM116Q8NCL8 245 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 SLC24A4Q8NFF2 622 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 TMEM230Q96A57 120 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 SPAG8Q99932 426 aaPredicted RBP6.09□□□□□ -1.43
VPS53-214ENST00000572607 TM2D3Q9BRN9 247 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 SHPKQ9UHJ6 478 aa6.09□□□□□ -1.43
VPS53-214ENST00000572607 IGHV3OR16-8A0A075B7F1 116 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms