RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 QTRT1Q9BXR0 403 aaKnown RBP8.05□□□□□ -1.12
VPS53-207ENST00000570510 TMEM140Q9NV12 185 aa8.05□□□□□ -1.12
VPS53-207ENST00000570510 HERC1Q15751 4861 aa8.05□□□□□ -1.12
VPS53-207ENST00000570510 DYNC1H1Q14204 4646 aaKnown RBP8.05□□□□□ -1.12
VPS53-207ENST00000570510 HSPG2P98160 4391 aa8.05□□□□□ -1.12
VPS53-207ENST00000570510 MFSD2BA6NFX1 497 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 CCDC160A6NGH7 325 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 C15orf61A6NNL5 157 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 ZNF207O43670 478 aaKnown RBP8.04□□□□□ -1.12
VPS53-207ENST00000570510 REG1AP05451 166 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 LPAR6P43657 344 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 DHODHQ02127 395 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 SPANXN2Q5MJ10 180 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 SSX9Q7RTT3 188 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 TBC1D26Q86UD7 250 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 CCDC190Q86UF4 302 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 Q8NAQ8 132 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 TMEM190Q8WZ59 177 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 TMEM14BQ9NUH8 114 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 COPZ2Q9P299 210 aa8.04□□□□□ -1.12
VPS53-207ENST00000570510 C14orf166Q9Y224 244 aaKnown RBP8.04□□□□□ -1.12
VPS53-207ENST00000570510 DNAH17Q9UFH2 4485 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 IGHV3OR16-8A0A075B7F1 116 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 M0QYG6 137 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 TRAPPC2P0DI81 140 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 TRAPPC2BP0DI82 140 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 PGAM2P15259 253 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 AREGP15514 252 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 UCP1P25874 307 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 PIGPP57054 158 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 CNPY1Q3B7I2 92 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 OR2B11Q5JQS5 317 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 Q6ZRM9 215 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 STHQ8IWL8 128 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 VKORC1L1Q8N0U8 176 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 VN1R17PQ8TDU5 208 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 IL22RA2Q969J5 263 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 LSM10Q969L4 123 aaKnown RBP8.03□□□□□ -1.12
VPS53-207ENST00000570510 SEC22AQ96IW7 307 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 SLC25A21Q9BQT8 299 aaPredicted RBP8.03□□□□□ -1.12
VPS53-207ENST00000570510 ZNF436Q9C0F3 470 aaPredicted RBP8.03□□□□□ -1.12
VPS53-207ENST00000570510 NDUFA4L2Q9NRX3 87 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 GPR132Q9UNW8 380 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 KCNIP3Q9Y2W7 256 aa8.03□□□□□ -1.12
VPS53-207ENST00000570510 C3orf85A0A1B0GTC6 90 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 OR2T8A6NH00 312 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 DNASE2O00115 360 aaPredicted RBP8.02□□□□□ -1.13
VPS53-207ENST00000570510 TGOLN2O43493 480 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 CDS2O95674 445 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 KRASP01116 189 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 RBMY1A1P0DJD3 496 aaKnown RBP8.02□□□□□ -1.13
VPS53-207ENST00000570510 RBMY1CP0DJD4 496 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 SRPXP78539 464 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 AARDQ4LEZ3 155 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 PHLDA2Q53GA4 152 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 Q6ZR54 194 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 ZNF767PQ75MW2 155 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 H2BFWTQ7Z2G1 175 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 GBGT1Q8N5D6 347 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 ZNF114Q8NC26 417 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 ZNF502Q8TBZ5 544 aa8.02□□□□□ -1.13
VPS53-207ENST00000570510 DMBT1Q9UGM3 2413 aaPredicted RBP8.01□□□□□ -1.13
VPS53-207ENST00000570510 IGLV11-55A0A075B6I3 123 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 IGLC7A0M8Q6 106 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 NAP1L6A6NFF2 107 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 EPM2AB3EWF7 344 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 NDUFA4O00483 81 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 P0C879 139 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 HSPE1P61604 102 aaKnown RBP8.01□□□□□ -1.13
VPS53-207ENST00000570510 SCGB2B2Q4G0G5 96 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 TMEM41BQ5BJD5 291 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 SPSB3Q6PJ21 355 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 TOMM5Q8N4H5 51 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 OR4C16Q8NGL9 310 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 OR13C8Q8NGS7 320 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 OR1P1Q8NH06 330 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 OR52E5Q8NH55 327 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 OR4A16Q8NH70 328 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 RRNAD1Q96FB5 475 aaKnown RBP8.01□□□□□ -1.13
VPS53-207ENST00000570510 BSCL2Q96G97 398 aaPredicted RBP8.01□□□□□ -1.13
VPS53-207ENST00000570510 RNF2Q99496 336 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 TMEM222Q9H0R3 208 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 V9GYH0 126 aa8.01□□□□□ -1.13
VPS53-207ENST00000570510 TEX13DA0A0J9YY54 714 aaPredicted RBP8□□□□□ -1.13
VPS53-207ENST00000570510 TEX50A0A1B0GTY4 177 aa8□□□□□ -1.13
VPS53-207ENST00000570510 DUXBA0A1W2PPF3 345 aa8□□□□□ -1.13
VPS53-207ENST00000570510 CRYM-AS1A6NIL9 109 aa8□□□□□ -1.13
VPS53-207ENST00000570510 E7EUB6 86 aa8□□□□□ -1.13
VPS53-207ENST00000570510 K7EMT4 169 aa8□□□□□ -1.13
VPS53-207ENST00000570510 YIF1AO95070 293 aa8□□□□□ -1.13
VPS53-207ENST00000570510 INAFM2P0DMQ5 153 aa8□□□□□ -1.13
VPS53-207ENST00000570510 ANXA3P12429 323 aa8□□□□□ -1.13
VPS53-207ENST00000570510 ATP5IP56385 69 aaPredicted RBP8□□□□□ -1.13
VPS53-207ENST00000570510 UBE2MP61081 183 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 RPL11P62913 178 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 ERHP84090 104 aaKnown RBP8□□□□□ -1.13
VPS53-207ENST00000570510 PRCDQ00LT1 54 aa8□□□□□ -1.13
VPS53-207ENST00000570510 KLF9Q13886 244 aaPredicted RBP8□□□□□ -1.13
VPS53-207ENST00000570510 LEMD1Q68G75 181 aa8□□□□□ -1.13
VPS53-207ENST00000570510 UBAC2Q8NBM4 344 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms