RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 DEFB114Q30KQ6 69 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 CD300EQ496F6 205 aaPredicted RBP7.41□□□□□ -1.22
CLN3-220ENST00000566040 PRSS54Q6PEW0 395 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 NRARPQ7Z6K4 114 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 SLC24A4Q8NFF2 622 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 OR1L6Q8NGR2 347 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 DTD1Q8TEA8 209 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 PINX1Q96BK5 328 aaKnown RBP7.41□□□□□ -1.22
CLN3-220ENST00000566040 C19orf73Q9NVV2 129 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 RCL1Q9Y2P8 373 aaKnown RBP7.41□□□□□ -1.22
CLN3-220ENST00000566040 TMED3Q9Y3Q3 217 aa7.41□□□□□ -1.22
CLN3-220ENST00000566040 FAM90A26D6RGX4 464 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 CCNKO75909 580 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 IGLC1P0CG04 106 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 IAPPP10997 89 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 CBLN1P23435 193 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 NPY1RP25929 384 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 HTR2BP41595 481 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 SPSB3Q6PJ21 355 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 PLET1Q6UQ28 207 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 TMEM61Q8N0U2 210 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 LILRB2Q8N423 598 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 DUSP18Q8NEJ0 188 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 OR4X1Q8NH49 305 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 WDR89Q96FK6 387 aaPredicted RBP7.4□□□□□ -1.22
CLN3-220ENST00000566040 TXN2Q99757 166 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 MAGT1Q9H0U3 335 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 WFDC10AQ9H1F0 79 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 HEYLQ9NQ87 328 aaPredicted RBP7.4□□□□□ -1.22
CLN3-220ENST00000566040 THYN1Q9P016 225 aa7.4□□□□□ -1.22
CLN3-220ENST00000566040 IGKV1OR2-108A0A075B7D4 117 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 CENPXA8MT69 81 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 CEBPZOSA8MTT3 80 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 NDUFA4O00483 81 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 ZNF207O43670 478 aaKnown RBP7.39□□□□□ -1.23
CLN3-220ENST00000566040 APOHP02749 345 aaPredicted RBP7.39□□□□□ -1.23
CLN3-220ENST00000566040 H2AFB2P0C5Z0 115 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 MFAP4P55083 255 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 ELLP55199 621 aaPredicted RBP7.39□□□□□ -1.23
CLN3-220ENST00000566040 Q56UQ5 140 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 BTNL8Q6UX41 500 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 TOMM20LQ6UXN7 152 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 UBAC2Q8NBM4 344 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 UXS1Q8NBZ7 420 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 TMEM116Q8NCL8 245 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 OR1S1Q8NH92 325 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 ZNF431Q8TF32 576 aaPredicted RBP7.39□□□□□ -1.23
CLN3-220ENST00000566040 ELOVL1Q9BW60 279 aa7.39□□□□□ -1.23
CLN3-220ENST00000566040 SYNGR2O43760 224 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 CLN5O75503 358 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 IL5P05113 134 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 SNCAP37840 140 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 POLR2GP62487 172 aaKnown RBP eCLIP7.38□□□□□ -1.23
CLN3-220ENST00000566040 CD69Q07108 199 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 TIGITQ495A1 244 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 C4orf46Q504U0 113 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 FAM90A2PQ658T7 463 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 STPG3Q8N7X2 389 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 ZBTB8BQ8NAP8 495 aaPredicted RBP7.38□□□□□ -1.23
CLN3-220ENST00000566040 RNASEH2CQ8TDP1 164 aaKnown RBP7.38□□□□□ -1.23
CLN3-220ENST00000566040 MARVELD1Q9BSK0 173 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 PDCD10Q9BUL8 212 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 PEMTQ9UBM1 199 aa7.38□□□□□ -1.23
CLN3-220ENST00000566040 AGRNO00468 2067 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 FAM240BA0A1B0GVZ2 78 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 H3BP45 60 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 K7EMT4 169 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 CORTO00230 105 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 CYB5BO43169 146 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 MBPP02686 304 aaPredicted RBP7.37□□□□□ -1.23
CLN3-220ENST00000566040 CD7P09564 240 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 OPRK1P41145 380 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 RND2P52198 227 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 ARL16Q0P5N6 197 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 FAM106AQ4KMX7 169 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 LINC00322Q6ZN03 302 aaPredicted RBP7.37□□□□□ -1.23
CLN3-220ENST00000566040 SLC16A13Q7RTY0 426 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 OR2K2Q8NGT1 345 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 CITED4Q96RK1 184 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 B9D2Q9BPU9 175 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 DAZ1Q9NQZ3 744 aaKnown RBP7.37□□□□□ -1.23
CLN3-220ENST00000566040 U3KQ87 197 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 U3KQE9 123 aa7.37□□□□□ -1.23
CLN3-220ENST00000566040 IGHV3-49A0A0A0MS15 119 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 IGHV7-4-1A0A0J9YVY3 117 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 ZNF320A2RRD8 509 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 WRBO00258 174 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 CHEK1O14757 476 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 GNG7O60262 68 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 GAMTQ14353 236 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 USF2Q15853 346 aaPredicted RBP7.36□□□□□ -1.23
CLN3-220ENST00000566040 IAH1Q2TAA2 248 aaPredicted RBP7.36□□□□□ -1.23
CLN3-220ENST00000566040 TMEM14EPQ6UXP3 125 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 ZNF600Q6ZNG1 722 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 C12orf45Q8N5I9 185 aaPredicted RBP7.36□□□□□ -1.23
CLN3-220ENST00000566040 COQ8AQ8NI60 647 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 ST8SIA2Q92186 375 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 NPIPB3Q92617 1050 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 VSIRQ9H7M9 311 aa7.36□□□□□ -1.23
CLN3-220ENST00000566040 ENY2Q9NPA8 101 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms