RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 RPL5P46777 297 aaKnown RBP13.74□□□□□ -0.21
CLN3-218ENST00000565688 TAS2R19P59542 299 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 CTF1Q16619 201 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 TMEM229BQ8NBD8 167 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 OR13C8Q8NGS7 320 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 OR11H2Q8NH07 326 aa13.74□□□□□ -0.21
CLN3-218ENST00000565688 RNASE11Q8TAA1 199 aaKnown RBP13.74□□□□□ -0.21
CLN3-218ENST00000565688 A0A1B0GU03 582 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 CLN5O75503 358 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 CA1P00915 261 aaPredicted RBP13.73□□□□□ -0.21
CLN3-218ENST00000565688 OPRK1P41145 380 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 SP6Q3SY56 376 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 SCGB2B2Q4G0G5 96 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 FAM219AQ8IW50 185 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 LILRB2Q8N423 598 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 OR4X1Q8NH49 305 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 METTL26Q96S19 204 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 ABHD1Q96SE0 405 aa13.73□□□□□ -0.21
CLN3-218ENST00000565688 IGHV3-66A0A0C4DH42 116 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 RAB3DO95716 219 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 DEFB131AP59861 70 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 SSBP1Q04837 148 aaKnown RBP13.72□□□□□ -0.21
CLN3-218ENST00000565688 TMEM187Q14656 261 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 STEAP1BQ6NZ63 245 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 OR4D10Q8NGI6 311 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 C11orf45Q8TAV5 145 aa13.72□□□□□ -0.21
CLN3-218ENST00000565688 NARS2Q96I59 477 aaKnown RBP13.72□□□□□ -0.21
CLN3-218ENST00000565688 TRAV30A0A087WSZ9 112 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 IFNA4P05014 189 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 SPCS3P61009 180 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 MEF2DQ14814 521 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 BSXQ3C1V8 233 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 AARDQ4LEZ3 155 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 LEMD1Q68G75 181 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 STHQ8IWL8 128 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 OR52E5Q8NH55 327 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 MARCH1Q8TCQ1 289 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 NAA50Q9GZZ1 169 aaKnown RBP13.71□□□□□ -0.21
CLN3-218ENST00000565688 TMEM222Q9H0R3 208 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 FNDC4Q9H6D8 234 aaPredicted RBP13.71□□□□□ -0.21
CLN3-218ENST00000565688 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.71□□□□□ -0.21
CLN3-218ENST00000565688 RABAC1Q9UI14 185 aa13.71□□□□□ -0.21
CLN3-218ENST00000565688 RPS10-NUDT3A0A1W2PQS6 291 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 GABARAPH6UMI1 98 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 CDS2O95674 445 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 CRYBB3P26998 211 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 HTR2BP41595 481 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 MRPS10P82664 201 aaKnown RBP13.7□□□□□ -0.22
CLN3-218ENST00000565688 RBMS2Q15434 407 aaKnown RBP13.7□□□□□ -0.22
CLN3-218ENST00000565688 LGALS9CQ6DKI2 356 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 TMEM230Q96A57 120 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 GRAMD2BQ96HH9 432 aa13.7□□□□□ -0.22
CLN3-218ENST00000565688 C14orf166Q9Y224 244 aaKnown RBP13.7□□□□□ -0.22
CLN3-218ENST00000565688 A0A0G2JRQ6 117 aa13.69□□□□□ -0.22
CLN3-218ENST00000565688 P2RY1P47900 373 aa13.69□□□□□ -0.22
CLN3-218ENST00000565688 SURF2Q15527 256 aaPredicted RBP13.69□□□□□ -0.22
CLN3-218ENST00000565688 TMEM41BQ5BJD5 291 aa13.69□□□□□ -0.22
CLN3-218ENST00000565688 GPR107Q5VW38 600 aa13.69□□□□□ -0.22
CLN3-218ENST00000565688 FAM24BQ8N5W8 94 aa13.69□□□□□ -0.22
CLN3-218ENST00000565688 MRPL36Q9P0J6 103 aaKnown RBP13.69□□□□□ -0.22
CLN3-218ENST00000565688 TEX13DA0A0J9YY54 714 aaPredicted RBP13.68□□□□□ -0.22
CLN3-218ENST00000565688 K7EQG2 157 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 IGKV1-17P01599 117 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 OR5AC1P0C628 307 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 EIF2B2P49770 351 aaKnown RBP13.68□□□□□ -0.22
CLN3-218ENST00000565688 NANOS2P60321 138 aaKnown RBP13.68□□□□□ -0.22
CLN3-218ENST00000565688 DHODHQ02127 395 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 Q6ZRM9 215 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 STXBP6Q8NFX7 210 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 RBPMSQ93062 196 aaKnown RBP13.68□□□□□ -0.22
CLN3-218ENST00000565688 HEYLQ9NQ87 328 aaPredicted RBP13.68□□□□□ -0.22
CLN3-218ENST00000565688 FBXL17Q9UF56 701 aa13.68□□□□□ -0.22
CLN3-218ENST00000565688 DISC1C4P0D8 188 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 RGS5O15539 181 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 SMIM18P0DKX4 95 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 SLC25A4P12235 298 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 MLANAQ16655 118 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 MORN3Q6PF18 240 aaPredicted RBP13.67□□□□□ -0.22
CLN3-218ENST00000565688 RNASEH2CQ8TDP1 164 aaKnown RBP13.67□□□□□ -0.22
CLN3-218ENST00000565688 GLYATL2Q8WU03 294 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 RTBDNQ9BSG5 229 aaPredicted RBP13.67□□□□□ -0.22
CLN3-218ENST00000565688 MIXL1Q9H2W2 232 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 NAA60Q9H7X0 242 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 CACFD1Q9UGQ2 172 aa13.67□□□□□ -0.22
CLN3-218ENST00000565688 HELTA6NFD8 242 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 SPP1P10451 314 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 TCTAP57738 103 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 TIGITQ495A1 244 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 C2orf83Q53S99 150 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 TRPT1Q86TN4 253 aaKnown RBP13.66□□□□□ -0.22
CLN3-218ENST00000565688 OR1S2Q8NGQ3 325 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 Q8WTZ3 238 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 SMIM4Q8WVI0 70 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 RABL2AQ9UBK7 228 aaPredicted RBP13.66□□□□□ -0.22
CLN3-218ENST00000565688 CACNG5Q9UF02 275 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 RABL2BQ9UNT1 228 aa13.66□□□□□ -0.22
CLN3-218ENST00000565688 YPEL3P61236 119 aaPredicted RBP13.65□□□□□ -0.22
CLN3-218ENST00000565688 PRSS54Q6PEW0 395 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 NOXA1Q86UR1 476 aa13.65□□□□□ -0.22
CLN3-218ENST00000565688 SELENOHQ8IZQ5 122 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms