RNA–Protein interactions for RNA: ENST00000562357.5

CMTM3-204, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 4

Gene CMTM3, Length 792 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-204ENST00000562357 GALNT14Q96FL9 552 aa13.34□□□□□ -0.27
CMTM3-204ENST00000562357 RHPN1-AS1Q9BWJ2 59 aa13.34□□□□□ -0.27
CMTM3-204ENST00000562357 TMEM56-RWDD3S4R434 201 aa13.34□□□□□ -0.27
CMTM3-204ENST00000562357 SULT1A3P0DMM9 295 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 SULT1A4P0DMN0 295 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 AARDQ4LEZ3 155 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 Q6ZRM9 215 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 NOXA1Q86UR1 476 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 GPR146Q96CH1 333 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 OR10C1Q96KK4 312 aa13.33□□□□□ -0.28
CMTM3-204ENST00000562357 CD5P06127 495 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 SPANXN2Q5MJ10 180 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 CASC10Q5T4H9 136 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 PVRIGQ6DKI7 326 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 DEDD2Q8WXF8 326 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 EDA2RQ9HAV5 297 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 RETNQ9HD89 108 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 NBEAL2Q6ZNJ1 2754 aa13.32□□□□□ -0.28
CMTM3-204ENST00000562357 IGHV3-49A0A0A0MS15 119 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 ZNF701M0R085 212 aaPredicted RBP13.31□□□□□ -0.28
CMTM3-204ENST00000562357 CHEK1O14757 476 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 APOC4P55056 127 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 CMC4P56277 68 aaPredicted RBP13.31□□□□□ -0.28
CMTM3-204ENST00000562357 PAFAH1B2P68402 229 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 KLF9Q13886 244 aaPredicted RBP13.31□□□□□ -0.28
CMTM3-204ENST00000562357 TMEM187Q14656 261 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 TMED4Q7Z7H5 227 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 LGI3Q8N145 548 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 SLC24A4Q8NFF2 622 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 TMEM230Q96A57 120 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 RNF2Q99496 336 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 FAM110AQ9BQ89 295 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 TMEM231Q9H6L2 316 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 UBQLN2Q9UHD9 624 aa13.31□□□□□ -0.28
CMTM3-204ENST00000562357 PUS1Q9Y606 427 aaKnown RBP eCLIP13.31□□□□□ -0.28
CMTM3-204ENST00000562357 TRAV30A0A087WSZ9 112 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 A0A0B4J2A0 478 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 CLN5O75503 358 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 TMEM50AO95807 157 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 INPP1P49441 399 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 CCR6P51684 374 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 BSXQ3C1V8 233 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 TOMM20LQ6UXN7 152 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 OR4X1Q8NH49 305 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 IL17DQ8TAD2 202 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 RNASEH2CQ8TDP1 164 aaKnown RBP13.3□□□□□ -0.28
CMTM3-204ENST00000562357 TRIM63Q969Q1 353 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 NARS2Q96I59 477 aaKnown RBP13.3□□□□□ -0.28
CMTM3-204ENST00000562357 SHPKQ9UHJ6 478 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 V9GYH0 126 aa13.3□□□□□ -0.28
CMTM3-204ENST00000562357 NXPH3O95157 252 aa13.29□□□□□ -0.28
CMTM3-204ENST00000562357 SMCO1Q147U7 214 aa13.29□□□□□ -0.28
CMTM3-204ENST00000562357 C2orf83Q53S99 150 aa13.29□□□□□ -0.28
CMTM3-204ENST00000562357 ETFRF1Q6IPR1 90 aa13.29□□□□□ -0.28
CMTM3-204ENST00000562357 SLC25A21Q9BQT8 299 aaPredicted RBP13.29□□□□□ -0.28
CMTM3-204ENST00000562357 RBM38Q9H0Z9 239 aaKnown RBP13.29□□□□□ -0.28
CMTM3-204ENST00000562357 PRR13Q9NZ81 148 aa13.29□□□□□ -0.28
CMTM3-204ENST00000562357 IGKV3-7A0A075B6H7 116 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 A0A1W2PS18 150 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 SLC25A4P12235 298 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 VAMP1P23763 118 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 NPY1RP25929 384 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 TFPI2P48307 235 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 RPL11P62913 178 aaKnown RBP13.28□□□□□ -0.28
CMTM3-204ENST00000562357 TMEM128Q5BJH2 165 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 ZFAND6Q6FIF0 208 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 TCF24Q7RTU0 167 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 CCDC190Q86UF4 302 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 METTL26Q96S19 204 aa13.28□□□□□ -0.28
CMTM3-204ENST00000562357 FNDC4Q9H6D8 234 aaPredicted RBP13.28□□□□□ -0.28
CMTM3-204ENST00000562357 IGHV3OR16-13A0A075B7E8 117 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 IGHV3-74A0A0B4J1X5 117 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 DUXBA0A1W2PPF3 345 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 IFNA10P01566 189 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 NPPCP23582 126 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 SUPT4H1P63272 117 aaKnown RBP13.27□□□□□ -0.29
CMTM3-204ENST00000562357 ZNF79Q15937 498 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 ODF3L2Q3SX64 289 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 LYZL2Q7Z4W2 148 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 OR1S1Q8NH92 325 aa13.27□□□□□ -0.29
CMTM3-204ENST00000562357 A0A1B0GU03 582 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 DNASE2O00115 360 aaPredicted RBP13.26□□□□□ -0.29
CMTM3-204ENST00000562357 UBE2CO00762 179 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 TNFRSF9Q07011 255 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 NMSQ5H8A3 153 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 TRIQKQ629K1 86 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 OR1S2Q8NGQ3 325 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 DTD1Q8TEA8 209 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 ST8SIA2Q92186 375 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 ZNF414Q96IQ9 312 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 ZFAND3Q9H8U3 227 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 U3KQ87 197 aa13.26□□□□□ -0.29
CMTM3-204ENST00000562357 KMT2CQ8NEZ4 4911 aaKnown RBP13.25□□□□□ -0.29
CMTM3-204ENST00000562357 KIR2DL5BA0A0G2JN68 375 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 KIR2DL5BA0A0G2JPC4 375 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 RND2P52198 227 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 MLANAQ16655 118 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 TIGITQ495A1 244 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 KIR2DL5AQ8N109 375 aa13.25□□□□□ -0.29
CMTM3-204ENST00000562357 GBGT1Q8N5D6 347 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms