RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZP3P21754 424 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 MFAP4P55083 255 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 S100A10P60903 97 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 Q56UQ5 140 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 FAM209BQ5JX69 171 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 ACSM6Q6P461 480 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 RAB40CQ96S21 281 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 NMES1Q9C002 83 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 MGAM2Q2M2H8 2515 aa16.68■□□□□ 0.26
SNX1-210ENST00000560260 GGCTO75223 188 aaKnown RBP16.67■□□□□ 0.26
SNX1-210ENST00000560260 CCNKO75909 580 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 OR2C1O95371 312 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 CD33P20138 364 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 KLF5Q13887 457 aaPredicted RBP16.67■□□□□ 0.26
SNX1-210ENST00000560260 RPEL1Q2QD12 228 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 SLC16A13Q7RTY0 426 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 NOXA1Q86UR1 476 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 ATP6V0BQ99437 205 aa16.67■□□□□ 0.26
SNX1-210ENST00000560260 PAIP2BQ9ULR5 123 aaKnown RBP16.67■□□□□ 0.26
SNX1-210ENST00000560260 STRAPQ9Y3F4 350 aaKnown RBP16.67■□□□□ 0.26
SNX1-210ENST00000560260 LY86O95711 162 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 IFNA4P05014 189 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 ATP5IP56385 69 aaPredicted RBP16.66■□□□□ 0.26
SNX1-210ENST00000560260 SYNJ2BPP57105 145 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 CD69Q07108 199 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 PRSS54Q6PEW0 395 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 BSCL2Q96G97 398 aaPredicted RBP16.66■□□□□ 0.26
SNX1-210ENST00000560260 MED28Q9H204 178 aa16.66■□□□□ 0.26
SNX1-210ENST00000560260 IGHV3-35A0A0C4DH35 117 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 RPS10-NUDT3A0A1W2PQS6 291 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 PMS2P5A8MQ11 134 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 H0YIZ8 118 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 OVOL1O14753 267 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 CTSGP08311 255 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 IGLL1P15814 213 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 TAS2R30P59541 319 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 TMEM14EPQ6UXP3 125 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 TXN2Q99757 166 aa16.65■□□□□ 0.26
SNX1-210ENST00000560260 TSC22D2O75157 780 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 RND2P52198 227 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 RRAS2P62070 204 aaPredicted RBP16.64■□□□□ 0.25
SNX1-210ENST00000560260 RAB11AP62491 216 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 LRRC37A5PQ49AS3 106 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 HAPLN4Q86UW8 402 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 OR4X1Q8NH49 305 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 OR5AC2Q9NZP5 309 aa16.64■□□□□ 0.25
SNX1-210ENST00000560260 CLN5O75503 358 aa16.63■□□□□ 0.25
SNX1-210ENST00000560260 RPP30P78346 268 aaKnown RBP16.63■□□□□ 0.25
SNX1-210ENST00000560260 UNQ9165/PRO28630Q6UXU0 137 aa16.63■□□□□ 0.25
SNX1-210ENST00000560260 C1QL4Q86Z23 238 aa16.63■□□□□ 0.25
SNX1-210ENST00000560260 PPP1R1CQ8WVI7 109 aa16.63■□□□□ 0.25
SNX1-210ENST00000560260 L7N2F9 121 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 GNG7O60262 68 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 DEDDO75618 318 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 METTL15P1P0C7V9 234 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 SLC25A4P12235 298 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 EDN2P20800 178 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 NPBWR1P48145 328 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 VAMP2P63027 116 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 ARL16Q0P5N6 197 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 SPSB3Q6PJ21 355 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 TMEM116Q8NCL8 245 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 ACY3Q96HD9 319 aa16.62■□□□□ 0.25
SNX1-210ENST00000560260 ZNF436Q9C0F3 470 aaPredicted RBP16.62■□□□□ 0.25
SNX1-210ENST00000560260 FAM24AA6NFZ4 105 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 G3V4G9 280 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 GPX4P36969 197 aaPredicted RBP16.61■□□□□ 0.25
SNX1-210ENST00000560260 CYCSP99999 105 aaKnown RBP16.61■□□□□ 0.25
SNX1-210ENST00000560260 GAMTQ14353 236 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 OXLD1Q5BKU9 147 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 IL34Q6ZMJ4 242 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 ACOT7LQ6ZUV0 252 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 REC114Q7Z4M0 266 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 GPHB5Q86YW7 130 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 NPIPB3Q92617 1050 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 RCC1LQ96I51 464 aaKnown RBP16.61■□□□□ 0.25
SNX1-210ENST00000560260 GAR1Q9NY12 217 aaKnown RBP16.61■□□□□ 0.25
SNX1-210ENST00000560260 NOTCH3Q9UM47 2321 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 DNAH3Q8TD57 4116 aa16.61■□□□□ 0.25
SNX1-210ENST00000560260 IGSF23A1L1A6 192 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 SEC14L6B5MCN3 397 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 NUPL2O15504 423 aaKnown RBP16.6■□□□□ 0.25
SNX1-210ENST00000560260 IGKV1-17P01599 117 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 IGLC1P0CG04 106 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 SAMD5Q5TGI4 173 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 OR8G2PQ6IF36 304 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 ETFRF1Q6IPR1 90 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 OR9G4Q8NGQ1 327 aa16.6■□□□□ 0.25
SNX1-210ENST00000560260 MPC2O95563 127 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 BCAP31P51572 246 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 CAV2P51636 162 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 TIGITQ495A1 244 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 TMEM190Q8WZ59 177 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 RNF126Q9BV68 326 aa16.59■□□□□ 0.25
SNX1-210ENST00000560260 LYRM2Q9NU23 88 aaPredicted RBP16.59■□□□□ 0.25
SNX1-210ENST00000560260 IGKV1D-37A0A075B6S9 117 aa16.58■□□□□ 0.24
SNX1-210ENST00000560260 TRAV14DV4A0A0A6YYC5 116 aa16.58■□□□□ 0.24
SNX1-210ENST00000560260 LGALS9O00182 355 aa16.58■□□□□ 0.24
SNX1-210ENST00000560260 PVALBP20472 110 aaPredicted RBP16.58■□□□□ 0.24
SNX1-210ENST00000560260 ADAMTSL5Q6ZMM2 481 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms