RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PSMG3Q9BT73 122 aaPredicted RBP1.98□□□□□ -2.09
VPS13C-208ENST00000559119 IFI27L2Q9H2X8 130 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 PLEKHF2Q9H8W4 249 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF586Q9NXT0 402 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 CKLFQ9UBR5 152 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 PEF1Q9UBV8 284 aaKnown RBP1.98□□□□□ -2.09
VPS13C-208ENST00000559119 AK3Q9UIJ7 227 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF443Q9Y2A4 671 aaPredicted RBP1.98□□□□□ -2.09
VPS13C-208ENST00000559119 TBL2Q9Y4P3 447 aaKnown RBP1.98□□□□□ -2.09
VPS13C-208ENST00000559119 TRAPPC1Q9Y5R8 145 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 PLXNA3P51805 1871 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 UBR3Q6ZT12 1888 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 BRWD3Q6RI45 1802 aa1.98□□□□□ -2.09
VPS13C-208ENST00000559119 MGAMO43451 1857 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 TRPM7Q96QT4 1865 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 NUP205Q92621 2012 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 A0A0A6YYD5 115 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 A0A0B4J2E0 115 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PIGBOS1A0A0B4J2F0 54 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 A0A1B0GX12 115 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR2AG2A6NM03 316 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 C17orf112F2Z3M2 114 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 KLRC4-KLRK1H3BQV0 150 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PLPP1O14494 284 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 NUPR1O60356 82 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 S1PR2O95136 353 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CDS2O95674 445 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 MOSP00540 346 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 NRASP01111 189 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 KRASP01116 189 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 TNFP01375 233 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 MT-ND6P03923 174 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 HMGN2P05204 90 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 LINC00869P0C866 280 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CCL2P13500 99 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 HIST1H1CP16403 213 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 ALOX5APP20292 161 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PTNP21246 168 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 HINT1P49773 126 aaPredicted RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 NCBP2P52298 156 aaKnown RBP eCLIP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CRYBA4P53673 196 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CCL23P55773 120 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 RPL23P62829 140 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SEC11AP67812 179 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 RUNX1Q01196 453 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 FMODQ06828 376 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 LAGE3Q14657 143 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 GNMTQ14749 295 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PDGFRLQ15198 375 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM249Q2WGJ8 235 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 GLYATL3Q5SZD4 288 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PRAMEF5Q5TYX0 476 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PRAMEF6Q5VXH4 476 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 WDR82Q6UXN9 313 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 C12orf54Q6X4T0 127 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 FOXI2Q6ZQN5 318 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 ZNF550Q7Z398 422 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CALHM1Q8IU99 346 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SELENOHQ8IZQ5 122 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CMTM8Q8IZV2 173 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 LGI3Q8N145 548 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 TMEM256Q8N2U0 113 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 C17orf78Q8N4C9 275 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SLC22A24Q8N4F4 322 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SIGLECL1Q8N7X8 197 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 ZFP62Q8NB50 900 aaPredicted RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 ST6GALNAC3Q8NDV1 305 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR5A1Q8NGJ0 315 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR52E2Q8NGJ4 325 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR2Y1Q8NGV0 311 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR5H2Q8NGV7 314 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR13G1Q8NGZ3 307 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PFN4Q8NHR9 129 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 OR5P3Q8WZ94 311 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 C10orf35Q96D05 121 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 MRAP2Q96G30 205 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PMCHL2Q9BQD1 86 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 HSPB9Q9BQS6 159 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 TXNDC17Q9BRA2 123 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 RSG1Q9BU20 258 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SMIM3Q9BZL3 60 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PARP12Q9H0J9 701 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SH3BGRL3Q9H299 93 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 ST20Q9HBF5 79 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 PLEKHJ1Q9NW61 149 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 MRPL22Q9NWU5 206 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 FAM206AQ9NX38 181 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 CES1P1Q9UKY3 287 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 MMP17Q9ULZ9 603 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 LSM5Q9Y4Y9 91 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 YTHDF2Q9Y5A9 579 aaKnown RBP1.97□□□□□ -2.09
VPS13C-208ENST00000559119 IER3IP1Q9Y5U9 82 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 SHROOM3Q8TF72 1996 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 GREB1Q4ZG55 1949 aa1.97□□□□□ -2.09
VPS13C-208ENST00000559119 GPR179Q6PRD1 2367 aa1.96□□□□□ -2.09
VPS13C-208ENST00000559119 SCN1AP35498 2009 aa1.96□□□□□ -2.09
VPS13C-208ENST00000559119 PHF3Q92576 2039 aaKnown RBP1.96□□□□□ -2.09
VPS13C-208ENST00000559119 ADAMTSL1Q8N6G6 1762 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TRAV27A0A087WT01 109 aa1.96□□□□□ -2.1
VPS13C-208ENST00000559119 TRAV40A0A0B4J280 105 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms