RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 THAP8Q8NA92 274 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 ZNF114Q8NC26 417 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 SGMS2Q8NHU3 365 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 HIST1H2BLQ99880 126 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 IL36BQ9NZH7 164 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 ZNRD1Q9P1U0 126 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 TRAPPC1Q9Y5R8 145 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 CADP27708 2225 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 TRBV9A0A0B4J1U6 114 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 TCRBV4S1A1TA0A5B7 111 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 COX7A2P2O60397 106 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 IGLV2-23P01705 113 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 OR10J4P0C629 311 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 HIST1H1BP16401 226 aaKnown RBP5.88□□□□□ -1.47
VPS13C-206ENST00000558338 PLA2G5P39877 138 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 COMPP49747 757 aaPredicted RBP5.88□□□□□ -1.47
VPS13C-206ENST00000558338 RPL15P61313 204 aaKnown RBP5.88□□□□□ -1.47
VPS13C-206ENST00000558338 RPEL1Q2QD12 228 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 PDZD11Q5EBL8 140 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 GFI1BQ5VTD9 330 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 ZCCHC24Q8N2G6 241 aaKnown RBP5.88□□□□□ -1.47
VPS13C-206ENST00000558338 OCC1Q8TAD7 63 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 TMEM18Q96B42 140 aa5.88□□□□□ -1.47
VPS13C-206ENST00000558338 RALYQ9UKM9 306 aaKnown RBP5.88□□□□□ -1.47
VPS13C-206ENST00000558338 YLPM1P49750 1951 aaKnown RBP5.87□□□□□ -1.47
VPS13C-206ENST00000558338 EP300Q09472 2414 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-206ENST00000558338 TRBV20OR9-2A0A075B6H5 130 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 IGKV1OR2-108A0A075B7D4 117 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-206ENST00000558338 HELTA6NFD8 242 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 LINC00587B1AMM8 73 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 FOXH1O75593 365 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 FCN3O75636 299 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 GCGP01275 180 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 CA7P43166 264 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 REG1BP48304 166 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 PPOXP50336 477 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 YPEL3P61236 119 aaPredicted RBP5.87□□□□□ -1.47
VPS13C-206ENST00000558338 PAX2Q02962 417 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 TNP2Q05952 138 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 TIGITQ495A1 244 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 CENPWQ5EE01 88 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 BEND2Q8NDZ0 799 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 STXBP6Q8NFX7 210 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 OR10W1Q8NGF6 305 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 TMEM190Q8WZ59 177 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 SLC25A33Q9BSK2 321 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 SCNM1Q9BWG6 230 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 DNAJC4Q9NNZ3 241 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 CELSR3Q9NYQ7 3312 aa5.87□□□□□ -1.47
VPS13C-206ENST00000558338 TSTD3H0UI37 97 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 AMBPP02760 352 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 RPL27AP46776 148 aaKnown RBP5.86□□□□□ -1.47
VPS13C-206ENST00000558338 TAS2R60P59551 318 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 UBE2L3P68036 154 aaKnown RBP5.86□□□□□ -1.47
VPS13C-206ENST00000558338 ZNF90Q03938 601 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 JOSD1Q15040 202 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-206ENST00000558338 PRR30Q53SZ7 412 aaPredicted RBP5.86□□□□□ -1.47
VPS13C-206ENST00000558338 C10orf113Q5VZT2 155 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 PVRIGQ6DKI7 326 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 RNF5Q99942 180 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 SRSF8Q9BRL6 282 aaKnown RBP5.86□□□□□ -1.47
VPS13C-206ENST00000558338 CLEC7AQ9BXN2 247 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 KRTAP4-7Q9BYR0 210 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 OSTCQ9NRP0 149 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 TTC28Q96AY4 2481 aa5.86□□□□□ -1.47
VPS13C-206ENST00000558338 IGHV2-26A0A0B4J1V2 119 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 PSMB11A5LHX3 300 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 K7EN84 100 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 ENSAO43768 121 aaKnown RBP5.85□□□□□ -1.47
VPS13C-206ENST00000558338 MT-ND6P03923 174 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CRYBB3P26998 211 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 ERVFC1-1P60608 527 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 PKIAP61925 76 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 WT1-ASQ06250 92 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CLEC12BQ2HXU8 276 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 MOB3BQ86TA1 216 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 MUC15Q8N387 334 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 OR5AU1Q8NGC0 362 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 OR8B3Q8NGG8 313 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 C8orf46Q8TAG6 207 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 TMEM37Q8WXS4 190 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 FAM122AQ96E09 287 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 OR8B2Q96RD0 313 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 TRGV9Q99603 122 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CHRDL1Q9BU40 450 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 SLC25A2Q9BXI2 301 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 AURKAIP1Q9NWT8 199 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CNOT1A5YKK6 2376 aaKnown RBP5.85□□□□□ -1.47
VPS13C-206ENST00000558338 PLCE1Q9P212 2302 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 A0A1W2PPI3 338 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CGB1A6NKQ9 187 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 GGTLC3B5MD39 225 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 ISLRO14498 428 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 GATCO43716 136 aaKnown RBP5.85□□□□□ -1.47
VPS13C-206ENST00000558338 IGLV1-47P01700 117 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 MALP21145 153 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 PRSS8Q16651 343 aa5.85□□□□□ -1.47
VPS13C-206ENST00000558338 ZNF672Q499Z4 452 aaPredicted RBP5.85□□□□□ -1.47
VPS13C-206ENST00000558338 CLEC2AQ6UVW9 174 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms