RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	PSPN	O60542	156 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	DLX6	P56179	175 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	GAGE1	Q13065	139 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	PRSS57	Q6UWY2	283 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	CIART	Q8N365	385 aa	Predicted RBP	4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	COL25A1	Q9BXS0	654 aa	Predicted RBP	4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	GP6	Q9HCN6	339 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	WDR83OS	Q9Y284	106 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	GFRA1	P56159	465 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	TDRG1	Q3Y452	100 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR9G1	Q8NH87	305 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	LINC00479	Q96M42	142 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	SCNM1	Q9BWG6	230 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005		V9GYV3	84 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM90A9P	A6NNJ1	464 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	CACNG7	P62955	275 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRIP6	Q15654	476 aa	Known RBP	4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	NRN1L	Q496H8	165 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	LYRM7	Q5U5X0	104 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	TEX43	Q6ZNM6	134 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR4A5	Q8NH83	315 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	OTOR	Q9NRC9	128 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	MRPL16	Q9NX20	251 aa	Known RBP	4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNRD1	Q9P1U0	126 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	NIN	Q8N4C6	2090 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV1-18	A0A0C4DH31	117 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	SMIM27	A0A1W2PRY6	76 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	TCRBV4S1A1T	A0A5B7	111 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	LOXL3	P58215	753 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	MLANA	Q16655	118 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	SAMD5	Q5TGI4	173 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR1N2	Q8NGR9	330 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	RABAC1	Q9UI14	185 aa		4.11	□□□□□ -1.75
SYNE2-223	ENST00000557005	IL4	P05112	153 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	NBEAP1	P0C6P0	100 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	C2orf83	Q53S99	150 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q6ZS49	121 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	DEFB123	Q8N688	67 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	C20orf144	Q9BQM9	153 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SCRT1	Q9BWW7	348 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	RPUSD1	Q9UJJ7	312 aa	Known RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	MUC22	E2RYF6	1773 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV3OR16-8	A0A075B7F1	116 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRBV6-6	A0A0A6YYG2	114 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	YPEL1	O60688	119 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	LGALS7	P47929	136 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SLA	Q13239	276 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	GUSBP1	Q15486	140 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SFTA2	Q6UW10	78 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	LCNL1	Q6ZST4	164 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	WDR86	Q86TI4	376 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	GTSCR1	Q86UQ5	136 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	DEFB104A	Q8WTQ1	72 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	DNASE2B	Q8WZ79	361 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	COQ2	Q96H96	371 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	C8orf49	Q96NF6	230 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	YPEL2	Q96QA6	119 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	ST20	Q9HBF5	79 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	ZNF71	Q9NQZ8	489 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRBV20OR9-2	A0A075B6H5	130 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV1-24	A0A0C4DH33	117 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGHV1-69-2	A0A0G2JMI3	117 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	PRR33	A8MZF0	331 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005		D6R8Y8	96 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SMKR1	H3BMG3	65 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SYS1-DBNDD2	H3BUS1	97 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	NCR2	O95944	276 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	PRCD	Q00LT1	54 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005		Q0VG73	95 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	RSPO1	Q2MKA7	263 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	TIMM23B	Q5SRD1	257 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	EXOC3-AS1	Q8N2X6	119 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	STPG4	Q8N801	248 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR4C13	Q8NGP0	309 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	TP53BP1	Q12888	1972 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	TRAV30	A0A087WSZ9	112 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A0G2JLM5	398 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	AHRR	A9YTQ3	701 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	NPIPB11	E5RHQ5	1161 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKV2D-40	P01614	121 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGLV3-1	P01715	115 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	C9orf106	Q8NAJ2	232 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	OR5AN1	Q8NGI8	311 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	BEX4	Q9NWD9	120 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	NHP2	Q9NX24	153 aa	Known RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SOX21	Q9Y651	276 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	CCL25	O15444	150 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	SS18L1	O75177	396 aa	Predicted RBP	4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	HTN1	P15515	57 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	C16orf92	Q96LL3	132 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	CST9L	Q9H4G1	147 aa		4.1	□□□□□ -1.75
SYNE2-223	ENST00000557005	LOC102723996	A0A087X1L8	192 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A1B0GUT8	65 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005		A0A1B0GV72	72 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	FAM231B	A6NCW3	169 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005		M0R3E3	92 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	IGKC	P01834	107 aa		4.09	□□□□□ -1.75
SYNE2-223	ENST00000557005	CCL3L1	P16619	93 aa		4.09	□□□□□ -1.75

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