RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 CD69Q07108 199 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 LURAP1LQ8IV03 231 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 DTX2Q86UW9 622 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 B9A039 149 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 PCDH15Q96QU1 1955 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 FOXS1O43638 330 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 UMODP07911 640 aa16.37■□□□□ 0.21
HDAC4-215ENST00000543185 PEBP1P30086 187 aaKnown RBP16.37■□□□□ 0.21
HDAC4-215ENST00000543185 FABP5P3A8MUU1 101 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 KIF26AQ9ULI4 1882 aaPredicted RBP16.36■□□□□ 0.21
HDAC4-215ENST00000543185 SPINT1O43278 529 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 ACTL10Q5JWF8 245 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 ACP7Q6ZNF0 438 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 LOC105371242A0A075B767 164 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 TRAV12-3A0A0B4J271 114 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 TFPI2P48307 235 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 TMEM144Q7Z5S9 345 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 TMEM54Q969K7 222 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 C18orf12Q96KH6 178 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 RTBDNQ9BSG5 229 aaPredicted RBP16.36■□□□□ 0.21
HDAC4-215ENST00000543185 LHFPL4Q7Z7J7 247 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 ITLN1Q8WWA0 313 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 A0A0J9YW62 118 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 SNAI2O43623 268 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 CELA2BP08218 269 aaPredicted RBP16.36■□□□□ 0.21
HDAC4-215ENST00000543185 TIMP3P35625 211 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 MYF5P13349 255 aa16.36■□□□□ 0.21
HDAC4-215ENST00000543185 C9JCJ5 164 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 CD5P06127 495 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 ARPC1AQ92747 370 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 DUX3Q96PT4 197 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 RNF115Q9Y4L5 304 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 TRAV5A0A0B4J249 113 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 IGKV1-8A0A0C4DH67 115 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 GAGE12BA1L429 117 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 DMRTA2Q96SC8 542 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 PILRBQ9UKJ0 227 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 DLEU1O43261 78 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 TFF3Q07654 80 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 TMEM92Q6UXU6 159 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 NLRC5Q86WI3 1866 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 IGHV3OR16-12A0A075B7B8 117 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 SORL1Q92673 2214 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 A0A0G2JMM0 328 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 A0A1W2PPB8 328 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 KIR3DP1A8MWS1 328 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 TPRX1Q8N7U7 411 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 C21orf62Q9NYP8 219 aa16.35■□□□□ 0.21
HDAC4-215ENST00000543185 C15orf61A6NNL5 157 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 FOXH1O75593 365 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 C1orf162Q8NEQ5 155 aaPredicted RBP16.34■□□□□ 0.21
HDAC4-215ENST00000543185 FBLN5Q9UBX5 448 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 SRSF7Q16629 238 aaKnown RBP eCLIP16.34■□□□□ 0.213e-10■■■■■ 33.8
HDAC4-215ENST00000543185 AGMATQ9BSE5 352 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 PIN1P1O15428 100 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 RNF222A6NCQ9 220 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 FGF16O43320 207 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 SNRPCP09234 159 aaKnown RBP16.34■□□□□ 0.21
HDAC4-215ENST00000543185 C1orf53Q5VUE5 145 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 FAM219BQ5XKK7 198 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 NAPSAO96009 420 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 COL9A1P20849 921 aa16.34■□□□□ 0.21
HDAC4-215ENST00000543185 FOXD3Q9UJU5 478 aaPredicted RBP16.34■□□□□ 0.21
HDAC4-215ENST00000543185 CCL21O00585 134 aa16.33■□□□□ 0.21
HDAC4-215ENST00000543185 IGFBP6P24592 240 aaPredicted RBP16.33■□□□□ 0.21
HDAC4-215ENST00000543185 IFI27L1Q96BM0 104 aa16.33■□□□□ 0.21
HDAC4-215ENST00000543185 ZNF362Q5T0B9 420 aaPredicted RBP16.33■□□□□ 0.2
HDAC4-215ENST00000543185 Q6ZT83 130 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 RNASE7Q9H1E1 156 aaKnown RBP16.33■□□□□ 0.2
HDAC4-215ENST00000543185 LINC01590Q5TEZ4 76 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 FAM166AQ6J272 317 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 CFHR5Q9BXR6 569 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 INAFM2P0DMQ5 153 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 DPH3Q96FX2 82 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 TDGF1P13385 188 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 IGFBP2P18065 325 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 FOXC1Q12948 553 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 DCTN5Q9BTE1 182 aa16.33■□□□□ 0.2
HDAC4-215ENST00000543185 IGKV3OR2-268A0A0C4DH90 116 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 ZNF525Q8N782 197 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 MRPL27Q9P0M9 148 aaKnown RBP16.32■□□□□ 0.2
HDAC4-215ENST00000543185 LDLRAD4O15165 306 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 TNFRSF6BO95407 300 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 CENPVL1A0A0U1RR11 272 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 RNASE4P34096 147 aaKnown RBP16.32■□□□□ 0.2
HDAC4-215ENST00000543185 TEX38Q6PEX7 206 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 KLF17Q5JT82 389 aaPredicted RBP16.32■□□□□ 0.2
HDAC4-215ENST00000543185 CTHRC1Q96CG8 243 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 PILRAQ9UKJ1 303 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 EPDR1Q9UM22 224 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 KLF12Q9Y4X4 402 aa16.32■□□□□ 0.2
HDAC4-215ENST00000543185 TCRBV4S1A1TA0A5B7 111 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 LY96Q9Y6Y9 160 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 FAM90A2PQ658T7 463 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 ZNF501Q96CX3 271 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-215ENST00000543185 LINC00312Q9Y6C7 94 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 PRR14LQ5THK1 2151 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 FHL5Q5TD97 284 aa16.31■□□□□ 0.2
HDAC4-215ENST00000543185 MAFAQ8NHW3 353 aaPredicted RBP16.31■□□□□ 0.2
HDAC4-215ENST00000543185 PRR7Q8TB68 274 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms