RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 OR13C8Q8NGS7 320 aa9.69□□□□□ -0.86
RTN3-212ENST00000543123 VSIRQ9H7M9 311 aa9.69□□□□□ -0.86
RTN3-212ENST00000543123 CACFD1Q9UGQ2 172 aa9.69□□□□□ -0.86
RTN3-212ENST00000543123 PUS1Q9Y606 427 aaKnown RBP eCLIP9.69□□□□□ -0.86
RTN3-212ENST00000543123 IGHV3OR16-13A0A075B7E8 117 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 IGHV3-74A0A0B4J1X5 117 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 RPS10-NUDT3A0A1W2PQS6 291 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 RPL5P46777 297 aaKnown RBP9.68□□□□□ -0.86
RTN3-212ENST00000543123 SURF2Q15527 256 aaPredicted RBP9.68□□□□□ -0.86
RTN3-212ENST00000543123 PVRIGQ6DKI7 326 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 GBGT1Q8N5D6 347 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 ST8SIA2Q92186 375 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 METTL26Q96S19 204 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 ABHD1Q96SE0 405 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 MFFQ9GZY8 342 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 RABL2AQ9UBK7 228 aaPredicted RBP9.68□□□□□ -0.86
RTN3-212ENST00000543123 RABL2BQ9UNT1 228 aa9.68□□□□□ -0.86
RTN3-212ENST00000543123 TRAV30A0A087WSZ9 112 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 TEX13DA0A0J9YY54 714 aaPredicted RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 DISC1C4P0D8 188 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 CLN5O75503 358 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 TMEM50AO95807 157 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 LY6G6CO95867 125 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 RNASE2P10153 161 aaKnown RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 NPPCP23582 126 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 ETV6P41212 452 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 HTR2BP41595 481 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 EIF2B2P49770 351 aaKnown RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 SPCS3P61009 180 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 SP6Q3SY56 376 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 GPR141Q7Z602 305 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 OR4X1Q8NH49 305 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 MARCH1Q8TCQ1 289 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 GRAMD2BQ96HH9 432 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 ZNF414Q96IQ9 312 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 RARRES2Q99969 163 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 MRPS26Q9BYN8 205 aaKnown RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 NAA50Q9GZZ1 169 aaKnown RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 TMEM222Q9H0R3 208 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 MS4A6AQ9H2W1 248 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 ZFAND3Q9H8U3 227 aa9.67□□□□□ -0.86
RTN3-212ENST00000543123 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.67□□□□□ -0.86
RTN3-212ENST00000543123 CA1P00915 261 aaPredicted RBP9.66□□□□□ -0.86
RTN3-212ENST00000543123 SMIM18P0DKX4 95 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 DHODHQ02127 395 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 AARDQ4LEZ3 155 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 OR4D10Q8NGI6 311 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 OR52E5Q8NH55 327 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 SMIM4Q8WVI0 70 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 RBPMSQ93062 196 aaKnown RBP9.66□□□□□ -0.86
RTN3-212ENST00000543123 TMEM230Q96A57 120 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 PRRT1Q99946 306 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 C11orf68Q9H3H3 251 aaKnown RBP9.66□□□□□ -0.86
RTN3-212ENST00000543123 NAA60Q9H7X0 242 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 HEYLQ9NQ87 328 aaPredicted RBP9.66□□□□□ -0.86
RTN3-212ENST00000543123 RABAC1Q9UI14 185 aa9.66□□□□□ -0.86
RTN3-212ENST00000543123 CDS2O95674 445 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 OR5AC1P0C628 307 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 AKAIN1P0CW23 69 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 SLC25A4P12235 298 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 EWSR1Q01844 656 aaKnown RBP eCLIP9.65□□□□□ -0.86
RTN3-212ENST00000543123 ZNF124Q15973 351 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 BSXQ3C1V8 233 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 TMEM41BQ5BJD5 291 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 NOXA1Q86UR1 476 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 STHQ8IWL8 128 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 OR11H2Q8NH07 326 aa9.65□□□□□ -0.86
RTN3-212ENST00000543123 IGHV3-66A0A0C4DH42 116 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 A0A1B0GU03 582 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 APOHP02749 345 aaPredicted RBP9.64□□□□□ -0.87
RTN3-212ENST00000543123 CRYBB3P26998 211 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 DEFB131AP59861 70 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 TMEM187Q14656 261 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 STXBP6Q8NFX7 210 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 OR1S2Q8NGQ3 325 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 RNASEH2CQ8TDP1 164 aaKnown RBP9.64□□□□□ -0.87
RTN3-212ENST00000543123 PHLDA1Q8WV24 401 aaPredicted RBP9.64□□□□□ -0.87
RTN3-212ENST00000543123 SCGB3A2Q96PL1 93 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 MIXL1Q9H2W2 232 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 CACNG5Q9UF02 275 aa9.64□□□□□ -0.87
RTN3-212ENST00000543123 PIGBOS1A0A0B4J2F0 54 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 A0A0G2JRQ6 117 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 HELTA6NFD8 242 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 CRYM-AS1A6NIL9 109 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 CEBPZOSA8MTT3 80 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 CTDSPLO15194 276 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 IFNA4P05014 189 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 P2RY1P47900 373 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 IL18Q14116 193 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 RBMS2Q15434 407 aaKnown RBP9.63□□□□□ -0.87
RTN3-212ENST00000543123 C2orf83Q53S99 150 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 TMEM268Q5VZI3 342 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 LEMD1Q68G75 181 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 ETFRF1Q6IPR1 90 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 SLC24A4Q8NFF2 622 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 C11orf45Q8TAV5 145 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 Q8WTZ3 238 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 GLYATL2Q8WU03 294 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 RAB2BQ8WUD1 216 aa9.63□□□□□ -0.87
RTN3-212ENST00000543123 DIRAS2Q96HU8 199 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms