RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OR5T1Q8NG75 326 aa13.93□□□□□ -0.18
CLIP1-215ENST00000541108 MGST2Q99735 147 aa13.93□□□□□ -0.18
CLIP1-215ENST00000541108 RFNGQ9Y644 331 aa13.93□□□□□ -0.18
CLIP1-215ENST00000541108 FLNBO75369 2602 aaKnown RBP13.93□□□□□ -0.18
CLIP1-215ENST00000541108 ZNF705EA8MWA4 302 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-215ENST00000541108 AP4M1O00189 453 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 AGPAT2O15120 278 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 MBP02144 154 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 BLOC1S1P78537 153 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 SMR3AQ99954 134 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 GGTLC1Q9BX51 225 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 CDC42EP3Q9UKI2 254 aa13.92□□□□□ -0.18
CLIP1-215ENST00000541108 IGKV1OR2-108A0A075B7D4 117 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 G3V318 75 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 K7EIM0 57 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 BRI3O95415 125 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 PRH1P02810 166 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 RPL29P47914 159 aaKnown RBP13.91□□□□□ -0.18
CLIP1-215ENST00000541108 THAP8Q8NA92 274 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 NPIPB3Q92617 1050 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 ACY3Q96HD9 319 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 SONP18583 2426 aaKnown RBP13.91□□□□□ -0.18
CLIP1-215ENST00000541108 TRBV9A0A0B4J1U6 114 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 RND2P52198 227 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 OR4X1Q8NH49 305 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 PCNPQ8WW12 178 aaKnown RBP13.91□□□□□ -0.18
CLIP1-215ENST00000541108 PRSS22Q9GZN4 317 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 NPFFR1Q9GZQ6 430 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 TNFRSF19Q9NS68 423 aa13.91□□□□□ -0.18
CLIP1-215ENST00000541108 MRPL36Q9P0J6 103 aaKnown RBP13.9□□□□□ -0.18
CLIP1-215ENST00000541108 LINC00862A6NCI5 91 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 PPIFP30405 207 aaKnown RBP13.89□□□□□ -0.19
CLIP1-215ENST00000541108 TMEM41BQ5BJD5 291 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 Q6ZS46 218 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 RPRMQ9NS64 109 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 MED9Q9NWA0 146 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 SLC45A2Q9UMX9 530 aa13.89□□□□□ -0.19
CLIP1-215ENST00000541108 H3BUA1 57 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 CLDN34H7C241 214 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 TSPAN15O95858 294 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 IGHV3-48P01763 117 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 SRD5A1P18405 259 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 SELENOTP62341 195 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PRR20EP86478 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PRR20CP86479 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PRR20DP86480 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PRR20BP86481 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PRR20AP86496 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 FFAR4Q5NUL3 377 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 NECAP1Q8NC96 275 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 LYPD6BQ8NI32 183 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 VN1R17PQ8TDU5 208 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 TRGV9Q99603 122 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PXMP4Q9Y6I8 212 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 BAHCC1Q9P281 2608 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 TCRBV4S1A1TA0A5B7 111 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 ZFP92A6NM28 416 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 CLN5O75503 358 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 M6PRP20645 277 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 OR10J1P30954 320 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 NPBWR1P48145 328 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 FHITP49789 147 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 B2MP61769 119 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 ACOT6Q3I5F7 207 aaPredicted RBP13.88□□□□□ -0.19
CLIP1-215ENST00000541108 PXDC1Q5TGL8 231 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 ACSM6Q6P461 480 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 Q6ZRG5 221 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 ZNF355PQ9NSJ1 428 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 FBXL7Q9UJT9 491 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 HIVEP2P31629 2446 aa13.88□□□□□ -0.19
CLIP1-215ENST00000541108 IGKV1D-37A0A075B6S9 117 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 TRAV30A0A087WSZ9 112 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 IGHV3-21A0A0B4J1V1 117 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 OR2J3O76001 311 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 FCGR2BP31994 310 aaPredicted RBP13.87□□□□□ -0.19
CLIP1-215ENST00000541108 MFAP4P55083 255 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 MIC13Q5XKP0 118 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 CYP2G1PQ6ZSU1 146 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 STPG3Q8N7X2 389 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 FAM213BQ8TBF2 198 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 CXorf58Q96LI9 332 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 TXN2Q99757 166 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 VSIRQ9H7M9 311 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 SLC39A9Q9NUM3 307 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 LINC00527Q9UJ94 153 aa13.87□□□□□ -0.19
CLIP1-215ENST00000541108 NDUFB8O95169 186 aa13.86□□□□□ -0.19
CLIP1-215ENST00000541108 ELLP55199 621 aaPredicted RBP13.86□□□□□ -0.19
CLIP1-215ENST00000541108 Q8N2B8 174 aa13.86□□□□□ -0.19
CLIP1-215ENST00000541108 RPP25LQ8N5L8 163 aaKnown RBP13.86□□□□□ -0.19
CLIP1-215ENST00000541108 C21orf62Q9NYP8 219 aa13.86□□□□□ -0.19
CLIP1-215ENST00000541108 DNAJC9-AS1A6NH13 148 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 H2AFB1P0C5Y9 115 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 LINC00869P0C866 280 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 IGLC1P0CG04 106 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 RPL15P61313 204 aaKnown RBP13.85□□□□□ -0.19
CLIP1-215ENST00000541108 RHOGP84095 191 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 CFHR3Q02985 330 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 ZNF616Q08AN1 781 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 BPIFCQ8NFQ6 507 aa13.85□□□□□ -0.19
CLIP1-215ENST00000541108 OR10G4Q8NGN3 311 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms