RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-208	ENST00000540438		A0A1W2PPI3	338 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	NDUFS7	O75251	213 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	KLF17	Q5JT82	389 aa	Predicted RBP	13.64	□□□□□ -0.23
USP28-208	ENST00000540438	OR10G8	Q8NGN5	311 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	OR1P1	Q8NH06	330 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	DIRC2	Q96SL1	478 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	MPDU1	O75352	247 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	IGHV2-70	P01814	119 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	FBLN7	Q53RD9	439 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	MRPL54	Q6P161	138 aa	Known RBP	13.64	□□□□□ -0.23
USP28-208	ENST00000540438	ZNF833P	Q6ZTB9	187 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438		Q71RC1	249 aa	Predicted RBP	13.64	□□□□□ -0.23
USP28-208	ENST00000540438	MUC15	Q8N387	334 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	ADTRP	Q96IZ2	230 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	TCEAL7	Q9BRU2	100 aa		13.64	□□□□□ -0.23
USP28-208	ENST00000540438	CD3E	P07766	207 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	IGHV1-8	P0DP01	117 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	UBE2L3	P68036	154 aa	Known RBP	13.63	□□□□□ -0.23
USP28-208	ENST00000540438	AARD	Q4LEZ3	155 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	TEX38	Q6PEX7	206 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	OR1B1	Q8NGR6	318 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	SLC25A33	Q9BSK2	321 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	NDUFS6	O75380	124 aa	Known RBP	13.63	□□□□□ -0.23
USP28-208	ENST00000540438	ADM	P35318	185 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	ERH	P84090	104 aa	Known RBP	13.63	□□□□□ -0.23
USP28-208	ENST00000540438	LY6D	Q14210	128 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	MRPL41	Q8IXM3	137 aa	Known RBP	13.63	□□□□□ -0.23
USP28-208	ENST00000540438	C11orf42	Q8N5U0	333 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	OR1L8	Q8NGR8	309 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	FAM168A	Q92567	244 aa		13.63	□□□□□ -0.23
USP28-208	ENST00000540438	HELT	A6NFD8	242 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	RPL29	P47914	159 aa	Known RBP	13.62	□□□□□ -0.23
USP28-208	ENST00000540438	CD69	Q07108	199 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	PLGLA	Q15195	96 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	TMEM144	Q7Z5S9	345 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	NDUFA4L2	Q9NRX3	87 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	IGHV3OR16-8	A0A075B7F1	116 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	OR4C13	Q8NGP0	309 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.62	□□□□□ -0.23
USP28-208	ENST00000540438	ZNF355P	Q9NSJ1	428 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438	ELOVL5	Q9NYP7	299 aa		13.62	□□□□□ -0.23
USP28-208	ENST00000540438		K7ENP7	123 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	MFAP2	P55001	183 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	TMPRSS3	P57727	454 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	LDLRAD2	Q5SZI1	272 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	KCNIP4	Q6PIL6	250 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	OR5AN1	Q8NGI8	311 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	CORO2A	Q92828	525 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	SLC35E1	Q96K37	410 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	PRDM13	Q9H4Q3	707 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	GNG4	P50150	75 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.61	□□□□□ -0.23
USP28-208	ENST00000540438	FAM90A9P	A6NNJ1	464 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	PATE2	Q6UY27	113 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	PITPNC1	Q9UKF7	332 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	INSIG2	Q9Y5U4	225 aa		13.61	□□□□□ -0.23
USP28-208	ENST00000540438	COX7A2P2	O60397	106 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	IGLV2-23	P01705	113 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	ANAPC16	Q96DE5	110 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	EAF1	Q96JC9	268 aa	Predicted RBP	13.6	□□□□□ -0.23
USP28-208	ENST00000540438	ZAN	Q9Y493	2812 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	PPOX	P50336	477 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	RAB1C	Q92928	201 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	RAB9B	Q9NP90	201 aa		13.6	□□□□□ -0.23
USP28-208	ENST00000540438	USP9X	Q93008	2570 aa	Predicted RBP	13.59	□□□□□ -0.23
USP28-208	ENST00000540438	IGHV3-35	A0A0C4DH35	117 aa		13.59	□□□□□ -0.23
USP28-208	ENST00000540438	TMEM183A	Q8IXX5	376 aa		13.59	□□□□□ -0.23
USP28-208	ENST00000540438	BET1L	Q9NYM9	111 aa		13.59	□□□□□ -0.23
USP28-208	ENST00000540438	WASHC3	Q9Y3C0	194 aa		13.59	□□□□□ -0.23
USP28-208	ENST00000540438	C22orf46	C9J442	243 aa		13.59	□□□□□ -0.23
USP28-208	ENST00000540438	APOBEC3A	P31941	199 aa	Predicted RBP	13.59	□□□□□ -0.23
USP28-208	ENST00000540438	IGHV2-26	A0A0B4J1V2	119 aa		13.58	□□□□□ -0.23
USP28-208	ENST00000540438	GGCT	O75223	188 aa	Known RBP	13.58	□□□□□ -0.23
USP28-208	ENST00000540438	OSR1	Q8TAX0	266 aa	Predicted RBP	13.58	□□□□□ -0.23
USP28-208	ENST00000540438	PYGO2	Q9BRQ0	406 aa		13.58	□□□□□ -0.23
USP28-208	ENST00000540438	TMEM133	Q9H2Q1	129 aa		13.58	□□□□□ -0.23
USP28-208	ENST00000540438	PPIAL4C	A0A0B4J2A2	164 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	IGHV3-23	P01764	117 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	PPIAL4G	P0DN37	164 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	CNN1	P51911	297 aa	Known RBP	13.58	□□□□□ -0.24
USP28-208	ENST00000540438	TMEM155	Q4W5P6	130 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	ACTL10	Q5JWF8	245 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	ST6GALNAC3	Q8NDV1	305 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	OR5B3	Q8NH48	314 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	TECR	Q9NZ01	308 aa	Known RBP	13.58	□□□□□ -0.24
USP28-208	ENST00000540438	VSTM5	A8MXK1	200 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	SNURFL	B1AK76	121 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	SCGB1D1	O95968	90 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	GZMB	P10144	247 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	CDKN1A	P38936	164 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	HES1	Q14469	280 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	LINC00305	Q7Z4B0	112 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	MMD2	Q8IY49	270 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	OR1L6	Q8NGR2	347 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	ST6GALNAC6	Q969X2	333 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	SLC25A2	Q9BXI2	301 aa		13.58	□□□□□ -0.24
USP28-208	ENST00000540438	CORT	O00230	105 aa		13.57	□□□□□ -0.24
USP28-208	ENST00000540438	DLL1	O00548	723 aa		13.57	□□□□□ -0.24
USP28-208	ENST00000540438	VENTX	O95231	258 aa		13.57	□□□□□ -0.24
USP28-208	ENST00000540438	C2orf83	Q53S99	150 aa		13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms