RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PNKDQ8N490 385 aa10.65□□□□□ -0.7
LDLR-203ENST00000535915 TNFRSF13BO14836 293 aaPredicted RBP10.65□□□□□ -0.71
LDLR-203ENST00000535915 C8orf88P0DMB2 117 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 WT1-ASQ06250 92 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 PRR30Q53SZ7 412 aaPredicted RBP10.65□□□□□ -0.71
LDLR-203ENST00000535915 SSX8Q7RTT4 187 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 OR4A5Q8NH83 315 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 SLC25A33Q9BSK2 321 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 WASHC3Q9Y3C0 194 aa10.65□□□□□ -0.71
LDLR-203ENST00000535915 A0A1B0GUS0 222 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 GGTLC3B5MD39 225 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 LOXP28300 417 aaPredicted RBP10.64□□□□□ -0.71
LDLR-203ENST00000535915 SUMO1P63165 101 aaKnown RBP10.64□□□□□ -0.71
LDLR-203ENST00000535915 FAM71F2Q6NXP2 309 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 GBGT1Q8N5D6 347 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 LINC00311Q8N616 119 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 ZNF430Q9H8G1 570 aaPredicted RBP10.64□□□□□ -0.71
LDLR-203ENST00000535915 NGBQ9NPG2 151 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 ZNF835Q9Y2P0 537 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 TACC2O95359 2948 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 SHISA9B4DS77 424 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 E7EQL1 145 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 CBLN1P23435 193 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 YPEL3P61236 119 aaPredicted RBP10.64□□□□□ -0.71
LDLR-203ENST00000535915 RPEL1Q2QD12 228 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 C1orf194Q5T5A4 169 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 ST6GALNAC6Q969X2 333 aa10.64□□□□□ -0.71
LDLR-203ENST00000535915 TRAV9-1A0A075B6T8 112 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 CGB1A6NKQ9 187 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 INS-IGF2F8WCM5 200 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 SLC25A17O43808 307 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 IGHV3-48P01763 117 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 NBL1P41271 181 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 SSBP2P81877 361 aaPredicted RBP10.63□□□□□ -0.71
LDLR-203ENST00000535915 BATFQ16520 125 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 TMEM256Q8N2U0 113 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 C8orf31Q8N9H6 132 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 ZNF596Q8TC21 504 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 MRPL32Q9BYC8 188 aaKnown RBP10.63□□□□□ -0.71
LDLR-203ENST00000535915 TRAV5A0A0B4J249 113 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 IGLV2-23P01705 113 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 SUB1P53999 127 aaKnown RBP eCLIP10.63□□□□□ -0.719e-7■■■□□ 17.7
LDLR-203ENST00000535915 MORN5Q5VZ52 161 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 MMD2Q8IY49 270 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 DNAJC4Q9NNZ3 241 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 V9GYV3 84 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 LRBAP50851 2863 aa10.63□□□□□ -0.71
LDLR-203ENST00000535915 CEP295Q9C0D2 2601 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 GRIFINA4D1Z8 144 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 ENSAO43768 121 aaKnown RBP10.62□□□□□ -0.71
LDLR-203ENST00000535915 IGHV1-8P0DP01 117 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 DLX6P56179 175 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 LGALS4P56470 323 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 UBE2L3P68036 154 aaKnown RBP10.62□□□□□ -0.71
LDLR-203ENST00000535915 VMA21Q3ZAQ7 101 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 TIGITQ495A1 244 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 TMEM155Q4W5P6 130 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 OR1L6Q8NGR2 347 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 NPIPB3Q92617 1050 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 SLC25A2Q9BXI2 301 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 FNDC4Q9H6D8 234 aaPredicted RBP10.62□□□□□ -0.71
LDLR-203ENST00000535915 TPSG1Q9NRR2 321 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 KAAG1Q9UBP8 84 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 MALRD1Q5VYJ5 2156 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 IGHV1-69-2A0A0G2JMI3 117 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 A0A1W2PRE2 83 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 TCF21O43680 179 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 COX7A2P2O60397 106 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 OR5AU1Q8NGC0 362 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 RNF2Q99496 336 aa10.62□□□□□ -0.71
LDLR-203ENST00000535915 MRPL18Q9H0U6 180 aaKnown RBP10.62□□□□□ -0.71
LDLR-203ENST00000535915 RNASE7Q9H1E1 156 aaKnown RBP10.62□□□□□ -0.71
LDLR-203ENST00000535915 IGHV3-72A0A0B4J1Y9 119 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 PSMB11A5LHX3 300 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 ZNF705FA8MVS1 300 aaPredicted RBP10.61□□□□□ -0.71
LDLR-203ENST00000535915 REG1AP05451 166 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 ZNF705DP0CH99 300 aaPredicted RBP10.61□□□□□ -0.71
LDLR-203ENST00000535915 ZNF705BP0CI00 300 aaPredicted RBP10.61□□□□□ -0.71
LDLR-203ENST00000535915 MC5RP33032 325 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 TBR1Q16650 682 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 SPACA3Q8IXA5 215 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 OR8I2Q8N0Y5 310 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 RITA1Q96K30 269 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 FAM167A-AS1Q96KT0 104 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 LPAR2Q9HBW0 351 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 POLR3KQ9Y2Y1 108 aaPredicted RBP10.61□□□□□ -0.71
LDLR-203ENST00000535915 SIAH2O43255 324 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 IER3P46695 156 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 ZNF137PP52743 207 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 SAPCD1Q5SSQ6 148 aa10.61□□□□□ -0.71
LDLR-203ENST00000535915 TLN1Q9Y490 2541 aaKnown RBP10.6□□□□□ -0.71
LDLR-203ENST00000535915 A0A1W2PPI3 338 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 TCRBV4S1A1TA0A5B7 111 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 FCN1O00602 326 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 NUPR1O60356 82 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 MGST1P10620 155 aaKnown RBP10.6□□□□□ -0.71
LDLR-203ENST00000535915 FOXC1Q12948 553 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 FXYD3Q14802 87 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 C10orf113Q5VZT2 155 aa10.6□□□□□ -0.71
LDLR-203ENST00000535915 TMEM133Q9H2Q1 129 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms