RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 RPL35AP18077 110 aaKnown RBP12.93□□□□□ -0.34
DDX41-217ENST00000515562 TFPI2P48307 235 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 SPCS3P61009 180 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 IL18Q14116 193 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 BSXQ3C1V8 233 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 FAM90A2PQ658T7 463 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 LYG2Q86SG7 212 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 CLVS1Q8IUQ0 354 aaPredicted RBP12.93□□□□□ -0.34
DDX41-217ENST00000515562 APRG1Q8IVJ8 170 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 OR52E5Q8NH55 327 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 RBPMSQ93062 196 aaKnown RBP12.93□□□□□ -0.34
DDX41-217ENST00000515562 RNF183Q96D59 192 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 DIRAS2Q96HU8 199 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 PRRT1Q99946 306 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 TMEM231Q9H6L2 316 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 VSIRQ9H7M9 311 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 MAP6D1Q9H9H5 199 aa12.93□□□□□ -0.34
DDX41-217ENST00000515562 IGKV3-7A0A075B6H7 116 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 IGHV3OR16-13A0A075B7E8 117 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 IGHV3-74A0A0B4J1X5 117 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 TMEM50AO95807 157 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 ATF4P18848 351 aaPredicted RBP12.92□□□□□ -0.34
DDX41-217ENST00000515562 RPL5P46777 297 aaKnown RBP12.92□□□□□ -0.34
DDX41-217ENST00000515562 TMBIM6P55061 237 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 DHODHQ02127 395 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 TCF24Q7RTU0 167 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 OR4C16Q8NGL9 310 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 OR4X1Q8NH49 305 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 DYNC2LI1Q8TCX1 351 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 GLYATL2Q8WU03 294 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 ST8SIA2Q92186 375 aa12.92□□□□□ -0.34
DDX41-217ENST00000515562 RTBDNQ9BSG5 229 aaPredicted RBP12.92□□□□□ -0.34
DDX41-217ENST00000515562 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.92□□□□□ -0.34
DDX41-217ENST00000515562 RPS10-NUDT3A0A1W2PQS6 291 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 CXorf65A6NEN9 183 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 CRYM-AS1A6NIL9 109 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 NOL3O60936 208 aaKnown RBP12.91□□□□□ -0.34
DDX41-217ENST00000515562 CLN5O75503 358 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 HTR2BP41595 481 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 Q6ZRM9 215 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 GBGT1Q8N5D6 347 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 TMEM217Q8N7C4 229 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 LHFPL5Q8TAF8 219 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 FNDC4Q9H6D8 234 aaPredicted RBP12.91□□□□□ -0.34
DDX41-217ENST00000515562 CACFD1Q9UGQ2 172 aa12.91□□□□□ -0.34
DDX41-217ENST00000515562 TRAV2A0A0B4J234 112 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 A0A1B0GU03 582 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 NUPR2A6NF83 97 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 TMEM268Q5VZI3 342 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 METTL26Q96S19 204 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 MS4A6AQ9H2W1 248 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 CACNG5Q9UF02 275 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 RSL24D1Q9UHA3 163 aaKnown RBP12.9□□□□□ -0.34
DDX41-217ENST00000515562 GPR132Q9UNW8 380 aa12.9□□□□□ -0.34
DDX41-217ENST00000515562 TRAV30A0A087WSZ9 112 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 A0A1W2PS18 150 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 MPTX1A8MV57 137 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 DNASE2O00115 360 aaPredicted RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 GSTZ1O43708 216 aaPredicted RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 DFFBO76075 338 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 NPPCP23582 126 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 PMS2P11Q13670 270 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 ZNF124Q15973 351 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 SELENOHQ8IZQ5 122 aaKnown RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 OR51S1Q8NGJ8 323 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 GATAD1Q8WUU5 269 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 NARS2Q96I59 477 aaKnown RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 CSTL1Q9H114 145 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 HEYLQ9NQ87 328 aaPredicted RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 MRPL36Q9P0J6 103 aaKnown RBP12.89□□□□□ -0.35
DDX41-217ENST00000515562 SCP2D1Q9UJQ7 156 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 TMEM56-RWDD3S4R434 201 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 HYDINQ4G0P3 5121 aa12.89□□□□□ -0.35
DDX41-217ENST00000515562 ANKRD20A5PA0PJZ0 165 aa12.88□□□□□ -0.35
DDX41-217ENST00000515562 APOHP02749 345 aaPredicted RBP12.88□□□□□ -0.35
DDX41-217ENST00000515562 RPL11P62913 178 aaKnown RBP12.88□□□□□ -0.35
DDX41-217ENST00000515562 SLC24A4Q8NFF2 622 aa12.88□□□□□ -0.35
DDX41-217ENST00000515562 RNASEH2CQ8TDP1 164 aaKnown RBP12.88□□□□□ -0.35
DDX41-217ENST00000515562 IL22RA2Q969J5 263 aa12.88□□□□□ -0.35
DDX41-217ENST00000515562 SCGB3A2Q96PL1 93 aa12.88□□□□□ -0.35
DDX41-217ENST00000515562 ALMS1Q8TCU4 4167 aa12.88□□□□□ -0.35
DDX41-217ENST00000515562 IGHV3-66A0A0C4DH42 116 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 CEBPZOSA8MTT3 80 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 SLC25A4P12235 298 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 C2orf83Q53S99 150 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 LILRB2Q8N423 598 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 TMEM230Q96A57 120 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 GPR146Q96CH1 333 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 SLIRPQ9GZT3 109 aaKnown RBP12.87□□□□□ -0.35
DDX41-217ENST00000515562 KCNIP3Q9Y2W7 256 aa12.87□□□□□ -0.35
DDX41-217ENST00000515562 IGKV1-17P01599 117 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 CRYBB3P26998 211 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 EWSR1Q01844 656 aaKnown RBP eCLIP12.86□□□□□ -0.35
DDX41-217ENST00000515562 NOXA1Q86UR1 476 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 OR1S2Q8NGQ3 325 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 GRAMD2BQ96HH9 432 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 MCUBQ9NWR8 336 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 RABAC1Q9UI14 185 aa12.86□□□□□ -0.35
DDX41-217ENST00000515562 H3BMQ9 156 aa12.85□□□□□ -0.35
DDX41-217ENST00000515562 IGLC1P0CG04 106 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms