RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 RPL8P62917 257 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 FAM27BQ5VT28 67 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 SVIPQ8NHG7 77 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 MSRB2Q9Y3D2 182 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 IGHV3-72A0A0B4J1Y9 119 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV1-8A0A0C4DH67 115 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 KLF17Q5JT82 389 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 TEX38Q6PEX7 206 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 TMEM105Q8N8V8 129 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 SSC4DQ8WTU2 575 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 METTL26Q96S19 204 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 CRIM1Q9NZV1 1036 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 PLXNB2O15031 1838 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 IGLV1-36A0A0B4J1U3 117 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 A0A0J9YW62 118 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 ATP5G3P48201 142 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 RHOGP84095 191 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 TMEM187Q14656 261 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 DDB2Q92466 427 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 DCTN5Q9BTE1 182 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 FNDC1Q4ZHG4 1894 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 DOCK10Q96BY6 2186 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 hDV102S1A0JD36 115 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 CGB1A6NKQ9 187 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 PPBPP02775 128 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 DNAJC30Q96LL9 226 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 TOMM7Q9P0U1 55 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 SLC25A10Q9UBX3 287 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 DNAH12Q6ZR08 3092 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 TOMM40O96008 361 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 INAFM2P0DMQ5 153 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 CCL20P78556 96 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 LCN12Q6JVE5 192 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 ABHD12Q8N2K0 398 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 TMEM256Q8N2U0 113 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 CIARTQ8N365 385 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 C1QTNF4Q9BXJ3 329 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 HS3ST3B1Q9Y662 390 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 GREB1Q4ZG55 1949 aa7.37□□□□□ -1.23
LIMCH1-218ENST00000513024 C9orf118A6NHY6 69 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 H3BMM0 161 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 IGHV3-48P01763 117 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ATP5L2Q7Z4Y8 100 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF721Q8TF20 911 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 WFDC12Q8WWY7 111 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 UBE2WQ96B02 151 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 MRPL20Q9BYC9 149 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 CHTOPQ9Y3Y2 248 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 CGAP01215 116 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 DUX4L9Q6RFH8 374 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF826PQ6ZT77 177 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 OVOL2Q9BRP0 275 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NPCDR1Q9BY65 106 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 OTOFQ9HC10 1997 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 TRAV8-3A0A0A6YYJ7 113 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NPFFO15130 113 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NAPSAO96009 420 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 GPX1P07203 203 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 CRYBA2P53672 197 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 SRSF1Q07955 248 aaKnown RBP eCLIP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ECSCRQ19T08 205 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 WDR82Q6UXN9 313 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ZNF818PQ6ZRF7 136 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ANKRD29Q8N6D5 301 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 C3orf56Q8N813 242 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ARHGEF17Q96PE2 2063 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 SPXQ9BT56 116 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 SCN10AQ9Y5Y9 1956 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 TANC1Q9C0D5 1861 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 TRAV14DV4A0A0A6YYC5 116 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 K7EP34 96 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NBEAP1P0C6P0 100 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 ZP4Q12836 540 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 LINC01590Q5TEZ4 76 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NEU4Q8WWR8 484 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 FBXL15Q9H469 300 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 NOTCH3Q9UM47 2321 aa7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 TDRD15B5MCY1 1934 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-218ENST00000513024 F8VVB4 439 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 F8VWA3 439 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 CRPP02741 224 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 SAA1P0DJI8 122 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 FOXL1Q12952 345 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 ACTL10Q5JWF8 245 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 SPACA3Q8IXA5 215 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 LHFPL6Q9Y693 200 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 POLEQ07864 2286 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 A0A1W2PS18 150 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 M0R381 172 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 MPZP25189 248 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 CCL8P80075 99 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 GTSCR1Q86UQ5 136 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 POLR3KQ9Y2Y1 108 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 SCN2AQ99250 2005 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 LINC01549A6NIU2 74 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 ORMDL2Q53FV1 153 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 RNASE7Q9H1E1 156 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 TNFRSF18Q9Y5U5 241 aa7.35□□□□□ -1.23
LIMCH1-218ENST00000513024 SDK2Q58EX2 2172 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms