RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 WI2-2373I1.2A0A1W2PRP0 233 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 A8MWP6 167 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 IFNA10P01566 189 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 IGLV1-51P01701 117 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 IL5P05113 134 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 SPNP16150 400 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 FAM106AQ4KMX7 169 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 C12orf45Q8N5I9 185 aaPredicted RBP13.81□□□□□ -0.2
NPHP4-210ENST00000506941 PEMTQ9UBM1 199 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 U3KQ87 197 aa13.81□□□□□ -0.2
NPHP4-210ENST00000506941 TGP01266 2768 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 ZNF320A2RRD8 509 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 TMEM213A2RRL7 107 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 C2orf70A6NJV1 201 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 SYNGR2O43760 224 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 ID3Q02535 119 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 IAH1Q2TAA2 248 aaPredicted RBP13.8□□□□□ -0.2
NPHP4-210ENST00000506941 UXS1Q8NBZ7 420 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 RNASEH2CQ8TDP1 164 aaKnown RBP13.8□□□□□ -0.2
NPHP4-210ENST00000506941 CACNG8Q8WXS5 425 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 SIGLEC8Q9NYZ4 499 aa13.8□□□□□ -0.2
NPHP4-210ENST00000506941 C15orf62A8K5M9 175 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 K7EIL1 84 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 GNG7O60262 68 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 MED6O75586 246 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 TM4SF20Q53R12 229 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 ZBTB8BQ8NAP8 495 aaPredicted RBP13.79□□□□□ -0.2
NPHP4-210ENST00000506941 TMEM190Q8WZ59 177 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 PRR25Q96S07 402 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 MARVELD1Q9BSK0 173 aa13.79□□□□□ -0.2
NPHP4-210ENST00000506941 GAR1Q9NY12 217 aaKnown RBP13.79□□□□□ -0.2
NPHP4-210ENST00000506941 IGHV3OR16-8A0A075B7F1 116 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 INMT-MINDY4F8WBC2 141 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 WRBO00258 174 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 NDUFA4O00483 81 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 NUPL2O15504 423 aaKnown RBP13.78□□□□□ -0.2
NPHP4-210ENST00000506941 FOLR2P14207 255 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 NKX2-1P43699 371 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-210ENST00000506941 NPBWR1P48145 328 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 POLR2GP62487 172 aaKnown RBP eCLIP13.78□□□□□ -0.2
NPHP4-210ENST00000506941 PRSS54Q6PEW0 395 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 OR4X1Q8NH49 305 aa13.78□□□□□ -0.2
NPHP4-210ENST00000506941 ZNF256Q9Y2P7 627 aaPredicted RBP13.78□□□□□ -0.2
NPHP4-210ENST00000506941 CLN5O75503 358 aa13.77□□□□□ -0.21
NPHP4-210ENST00000506941 TMEM50AO95807 157 aa13.77□□□□□ -0.21
NPHP4-210ENST00000506941 NOXA1Q86UR1 476 aa13.77□□□□□ -0.21
NPHP4-210ENST00000506941 CIB3Q96Q77 187 aaPredicted RBP13.77□□□□□ -0.21
NPHP4-210ENST00000506941 GSKIPQ9P0R6 139 aa13.77□□□□□ -0.21
NPHP4-210ENST00000506941 ZMAT5Q9UDW3 170 aaKnown RBP13.77□□□□□ -0.21
NPHP4-210ENST00000506941 COL7A1Q02388 2944 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 RPS10-NUDT3A0A1W2PQS6 291 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 IZUMO1RA6ND01 250 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 FAM25EA8MYX2 175 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 SSSCA1O60232 199 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 CBLN1P23435 193 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 RND2P52198 227 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 ATP5IP56385 69 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-210ENST00000506941 RELQ04864 619 aaPredicted RBP13.76□□□□□ -0.21
NPHP4-210ENST00000506941 CD69Q07108 199 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 RCL1Q9Y2P8 373 aaKnown RBP13.76□□□□□ -0.21
NPHP4-210ENST00000506941 SELENOKQ9Y6D0 94 aa13.76□□□□□ -0.21
NPHP4-210ENST00000506941 H3BP45 60 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 PRAF2O60831 178 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 SCGB1D2O95969 90 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 IGKV1-17P01599 117 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 MBPP02686 304 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-210ENST00000506941 IFNA4P05014 189 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 C8orf88P0DMB2 117 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 SLC25A4P12235 298 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 ELLP55199 621 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-210ENST00000506941 PAX9P55771 341 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 SLC16A13Q7RTY0 426 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 TMEM116Q8NCL8 245 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 MRAPQ8TCY5 172 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 C20orf24Q9BUV8 137 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 GPN1Q9HCN4 374 aaPredicted RBP13.75□□□□□ -0.21
NPHP4-210ENST00000506941 PALMDQ9NP74 551 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 MLXQ9UH92 298 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 UFC1Q9Y3C8 167 aa13.75□□□□□ -0.21
NPHP4-210ENST00000506941 C5orf51A6NDU8 294 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 SNRPGP15A8MWD9 76 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 PRSS46E5RG02 174 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 ZNF207O43670 478 aaKnown RBP13.74□□□□□ -0.21
NPHP4-210ENST00000506941 LY86O95711 162 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 DEFB114Q30KQ6 69 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 TIGITQ495A1 244 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 CD300EQ496F6 205 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-210ENST00000506941 SPANXN5Q5MJ07 72 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 ETFRF1Q6IPR1 90 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 ZFAND3Q9H8U3 227 aa13.74□□□□□ -0.21
NPHP4-210ENST00000506941 DAZ1Q9NQZ3 744 aaKnown RBP13.74□□□□□ -0.21
NPHP4-210ENST00000506941 PAIP2BQ9ULR5 123 aaKnown RBP13.74□□□□□ -0.21
NPHP4-210ENST00000506941 DNAH9Q9NYC9 4486 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 PTTG1O95997 202 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 IGLC1P0CG04 106 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 GP9P14770 177 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 RAB11AP62491 216 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 TOMM20LQ6UXN7 152 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 ZNF600Q6ZNG1 722 aa13.73□□□□□ -0.21
NPHP4-210ENST00000506941 DYNLRB2Q8TF09 96 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms