RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RBMY1A1P0DJD3 496 aaKnown RBP11.95□□□□□ -0.5
VIM-208ENST00000497849 RBMY1CP0DJD4 496 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 RBMY1FQ15415 496 aaKnown RBP11.95□□□□□ -0.5
VIM-208ENST00000497849 ZNF66Q6ZN08 573 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 KCTD9Q7L273 389 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 SSX9Q7RTT3 188 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 PUSL1Q8N0Z8 303 aaKnown RBP11.95□□□□□ -0.5
VIM-208ENST00000497849 SCGB3A2Q96PL1 93 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 OR2A7Q96R45 310 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 HSD17B10Q99714 261 aaKnown RBP11.95□□□□□ -0.5
VIM-208ENST00000497849 RTBDNQ9BSG5 229 aaPredicted RBP11.95□□□□□ -0.5
VIM-208ENST00000497849 RNF126Q9BV68 326 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 GPR132Q9UNW8 380 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 FLVCR2Q9UPI3 526 aa11.95□□□□□ -0.5
VIM-208ENST00000497849 CA1P00915 261 aaPredicted RBP11.94□□□□□ -0.5
VIM-208ENST00000497849 DEFA4P12838 97 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 MAS1LP35410 378 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 TMEM187Q14656 261 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 MSMO1Q15800 293 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 LPCAT3Q6P1A2 487 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 TBC1D26Q86UD7 250 aa11.94□□□□□ -0.5
VIM-208ENST00000497849 IGHV3OR16-8A0A075B7F1 116 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 CDK2AP2O75956 126 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 P0DMU3 169 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 FAM231AP0DMU4 169 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 FAM231CP0DMU5 169 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 PIGPP57054 158 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 SURF2Q15527 256 aaPredicted RBP11.93□□□□□ -0.5
VIM-208ENST00000497849 CMTM1Q8IZ96 169 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 SPAG16Q8N0X2 631 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 VSTM2AQ8TAG5 236 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 ZFAND1Q8TCF1 268 aa11.93□□□□□ -0.5
VIM-208ENST00000497849 DNAH5Q8TE73 4624 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 IGHV4-28A0A0C4DH34 117 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 ZNF207O43670 478 aaKnown RBP11.92□□□□□ -0.5
VIM-208ENST00000497849 PRAF2O60831 178 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 AMBPP02760 352 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 LPAR6P43657 344 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 SP6Q3SY56 376 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 Q6ZR54 194 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 TMED4Q7Z7H5 227 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 RNF2Q99496 336 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 CHRDL1Q9BU40 450 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 C14orf166Q9Y224 244 aaKnown RBP11.92□□□□□ -0.5
VIM-208ENST00000497849 PRELID3BQ9Y3B1 194 aa11.92□□□□□ -0.5
VIM-208ENST00000497849 OR2T8A6NH00 312 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 C15orf61A6NNL5 157 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 K7EMT4 169 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 NDUFA4O00483 81 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 IL5P05113 134 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 ANXA7P20073 488 aaKnown RBP11.91□□□□□ -0.5
VIM-208ENST00000497849 TFPI2P48307 235 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 CMC4P56277 68 aaPredicted RBP11.91□□□□□ -0.5
VIM-208ENST00000497849 TAS2R31P59538 309 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 RND3P61587 244 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 CATR1Q13166 79 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 TMEM230Q96A57 120 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 C20orf24Q9BUV8 137 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 SCRT1Q9BWW7 348 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 ALG5Q9Y673 324 aa11.91□□□□□ -0.5
VIM-208ENST00000497849 ELOA3CA0A087WX78 387 aaPredicted RBP11.9□□□□□ -0.5
VIM-208ENST00000497849 A0A0B4J293 547 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 AKR1C4P17516 323 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 F2RP25116 425 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 RPL8P62917 257 aaKnown RBP11.9□□□□□ -0.5
VIM-208ENST00000497849 ZNF486Q96H40 463 aaPredicted RBP11.9□□□□□ -0.5
VIM-208ENST00000497849 ZNF414Q96IQ9 312 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 TP53RKQ96S44 253 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 GPN1Q9HCN4 374 aaPredicted RBP11.9□□□□□ -0.5
VIM-208ENST00000497849 PRR13Q9NZ81 148 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 SMPXQ9UHP9 88 aa11.9□□□□□ -0.5
VIM-208ENST00000497849 TEX13DA0A0J9YY54 714 aaPredicted RBP11.89□□□□□ -0.51
VIM-208ENST00000497849 IGLC7A0M8Q6 106 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 C7orf66A4D0T2 115 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 S100GP29377 79 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 BCAP31P51572 246 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 OR2B8PP59922 312 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 UBE2MP61081 183 aaKnown RBP11.89□□□□□ -0.51
VIM-208ENST00000497849 CCDC71LQ8N9Z2 235 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 OR4S2Q8NH73 311 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 VN1R17PQ8TDU5 208 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 AGRNO00468 2067 aa11.89□□□□□ -0.51
VIM-208ENST00000497849 IGKV3-7A0A075B6H7 116 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 IGLV2-18A0A075B6J9 118 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 C3orf85A0A1B0GTC6 90 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 F8W735 103 aaPredicted RBP11.88□□□□□ -0.51
VIM-208ENST00000497849 CHEK1O14757 476 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 GIG44P09565 113 aaPredicted RBP11.88□□□□□ -0.51
VIM-208ENST00000497849 HLA-GP17693 338 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 C4orf46Q504U0 113 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 CADM3Q8N126 398 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 Q8N1X5 172 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 BSCL2Q96G97 398 aaPredicted RBP11.88□□□□□ -0.51
VIM-208ENST00000497849 SEC22CQ9BRL7 303 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 RHPN1-AS1Q9BWJ2 59 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 NAA60Q9H7X0 242 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 THYN1Q9P016 225 aa11.88□□□□□ -0.51
VIM-208ENST00000497849 DEFB131BA0A096LNP1 70 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 CRYM-AS1A6NIL9 109 aa11.87□□□□□ -0.51
VIM-208ENST00000497849 C15orf62A8K5M9 175 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms