RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 CACNG5Q9UF02 275 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 TMEM56-RWDD3S4R434 201 aa11.72□□□□□ -0.53
HDAC4-213ENST00000496347 PIGBOS1A0A0B4J2F0 54 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 CHEK1O14757 476 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 OPRK1P41145 380 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 HTR2BP41595 481 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 APOC4P55056 127 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 AP3S2P59780 193 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 SRPXP78539 464 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 ODF3L2Q3SX64 289 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 ZNF600Q6ZNG1 722 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 Q6ZRM9 215 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 SELENOHQ8IZQ5 122 aaKnown RBP11.71□□□□□ -0.53
HDAC4-213ENST00000496347 IL17DQ8TAD2 202 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 TRIM63Q969Q1 353 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 RNF2Q99496 336 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 RHPN1-AS1Q9BWJ2 59 aa11.71□□□□□ -0.53
HDAC4-213ENST00000496347 SACSQ9NZJ4 4579 aa11.71□□□□□ -0.54
HDAC4-213ENST00000496347 LYSTQ99698 3801 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 TRAV14DV4A0A0A6YYC5 116 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 RPS10-NUDT3A0A1W2PQS6 291 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 OR4X1Q8NH49 305 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 DEDD2Q8WXF8 326 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 TMEM230Q96A57 120 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 ZFAND3Q9H8U3 227 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 KCNIP3Q9Y2W7 256 aa11.7□□□□□ -0.54
HDAC4-213ENST00000496347 CLN5O75503 358 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 SULT1A3P0DMM9 295 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 SULT1A4P0DMN0 295 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 ANXA3P12429 323 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 KLF9Q13886 244 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-213ENST00000496347 TMEM187Q14656 261 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 TOMM20LQ6UXN7 152 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 SLC24A4Q8NFF2 622 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 RNASEH2CQ8TDP1 164 aaKnown RBP11.69□□□□□ -0.54
HDAC4-213ENST00000496347 FNDC4Q9H6D8 234 aaPredicted RBP11.69□□□□□ -0.54
HDAC4-213ENST00000496347 PUS1Q9Y606 427 aaKnown RBP eCLIP11.69□□□□□ -0.54
HDAC4-213ENST00000496347 V9GYH0 126 aa11.69□□□□□ -0.54
HDAC4-213ENST00000496347 RYR2Q92736 4967 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 A0A0B4J2A0 478 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 KIR2DL5BA0A0G2JN68 375 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 KIR2DL5BA0A0G2JPC4 375 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 CCDC160A6NGH7 325 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 ZNF701M0R085 212 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-213ENST00000496347 S100A5P33763 92 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 C2orf83Q53S99 150 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 NMSQ5H8A3 153 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 ZFAND6Q6FIF0 208 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 Q6ZWC4 215 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 KIR2DL5AQ8N109 375 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 KIR2DL5BQ8NHK3 375 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 GPR146Q96CH1 333 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 RBM38Q9H0Z9 239 aaKnown RBP11.68□□□□□ -0.54
HDAC4-213ENST00000496347 TMEM231Q9H6L2 316 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 VSIRQ9H7M9 311 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 HEYLQ9NQ87 328 aaPredicted RBP11.68□□□□□ -0.54
HDAC4-213ENST00000496347 UBQLN2Q9UHD9 624 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 SHPKQ9UHJ6 478 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 TP53TG1Q9Y2A0 90 aa11.68□□□□□ -0.54
HDAC4-213ENST00000496347 TRAV30A0A087WSZ9 112 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 IGHV3-49A0A0A0MS15 119 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 CEBPZOSA8MTT3 80 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 UBE2CO00762 179 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 TMEM50AO95807 157 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 SLC25A4P12235 298 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 CMC4P56277 68 aaPredicted RBP11.67□□□□□ -0.54
HDAC4-213ENST00000496347 SUPT4H1P63272 117 aaKnown RBP11.67□□□□□ -0.54
HDAC4-213ENST00000496347 PYDC2Q56P42 97 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 FAM90A2PQ658T7 463 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 NOXA1Q86UR1 476 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 TOMM5Q8N4H5 51 aa11.67□□□□□ -0.54
HDAC4-213ENST00000496347 TRAV2A0A0B4J234 112 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 DUXBA0A1W2PPF3 345 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 AKR1C4P17516 323 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 NPY1RP25929 384 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 CCR6P51684 374 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 PAFAH1B2P68402 229 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 SMCO1Q147U7 214 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 ZNF79Q15937 498 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 LGI3Q8N145 548 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 ST8SIA2Q92186 375 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 METTL26Q96S19 204 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 OVOL2Q9BRP0 275 aa11.66□□□□□ -0.54
HDAC4-213ENST00000496347 MRPL36Q9P0J6 103 aaKnown RBP11.66□□□□□ -0.54
HDAC4-213ENST00000496347 LCE6AA0A183 80 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 A0A1B0GU03 582 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 A0A1W2PS18 150 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 IGKV1-17P01599 117 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 TNFRSF9Q07011 255 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 ETFRF1Q6IPR1 90 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 TCF24Q7RTU0 167 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 WFDC3Q8IUB2 231 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 OR1S2Q8NGQ3 325 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 HSPB7Q9UBY9 170 aa11.65□□□□□ -0.54
HDAC4-213ENST00000496347 IGHV3OR16-13A0A075B7E8 117 aa11.64□□□□□ -0.55
HDAC4-213ENST00000496347 IGHV3-74A0A0B4J1X5 117 aa11.64□□□□□ -0.55
HDAC4-213ENST00000496347 IGLC1P0CG04 106 aa11.64□□□□□ -0.55
HDAC4-213ENST00000496347 TMEM128Q5BJH2 165 aa11.64□□□□□ -0.55
HDAC4-213ENST00000496347 SPANXN2Q5MJ10 180 aa11.64□□□□□ -0.55
HDAC4-213ENST00000496347 PRSS54Q6PEW0 395 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms