RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, human

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-222	ENST00000495522	RNF2	Q99496	336 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	SLC25A17	O43808	307 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	C8orf88	P0DMB2	117 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	LGALS7	P47929	136 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	RPL15	P61313	204 aa	Known RBP	12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	USF2	Q15853	346 aa	Predicted RBP	12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	SLC25A33	Q9BSK2	321 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	PKDREJ	Q9NTG1	2253 aa		12.39	□□□□□ -0.43
CALD1-222	ENST00000495522	PIEZO1	Q92508	2521 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	ARFGEF3	Q5TH69	2177 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522		K7EN84	100 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	PLAU	P00749	431 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	PPOX	P50336	477 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	PDLIM4	P50479	330 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	TNFRSF14	Q92956	283 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	EAF1	Q96JC9	268 aa	Predicted RBP	12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	RALY	Q9UKM9	306 aa	Known RBP	12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	CEP295	Q9C0D2	2601 aa		12.38	□□□□□ -0.43
CALD1-222	ENST00000495522	CYB5R2	Q6BCY4	276 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	TRAPPC1	Q9Y5R8	145 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	PSMB11	A5LHX3	300 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	HELT	A6NFD8	242 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	ENSA	O43768	121 aa	Known RBP	12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	LINC01560	Q8TB33	94 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	FNDC4	Q9H6D8	234 aa	Predicted RBP	12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	DNAJC4	Q9NNZ3	241 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	TPSG1	Q9NRR2	321 aa		12.37	□□□□□ -0.43
CALD1-222	ENST00000495522	TRAV9-1	A0A075B6T8	112 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522		A0A1W2PRE2	83 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	AMBP	P02760	352 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	CRYBB3	P26998	211 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	GNG4	P50150	75 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	RITA1	Q96K30	269 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	IL36B	Q9NZH7	164 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	IGHV2-26	A0A0B4J1V2	119 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522		A0A1W2PPI3	338 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	FAM90A27P	A6NNH2	459 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522		A8MWP6	167 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	OR10J4	P0C629	311 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	CNN1	P51911	297 aa	Known RBP	12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	PRRX1	P54821	245 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	FBXL19-AS1	Q494R0	122 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	CENPW	Q5EE01	88 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	UNQ6494/PRO21346	Q6UXR6	183 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	MRPL41	Q8IXM3	137 aa	Known RBP	12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	MUC15	Q8N387	334 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	TEX45	Q8NA69	505 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	OR1L4	Q8NGR5	311 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	NPIPB3	Q92617	1050 aa		12.36	□□□□□ -0.43
CALD1-222	ENST00000495522	IGHV3-72	A0A0B4J1Y9	119 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	TCRBV4S1A1T	A0A5B7	111 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	GGTLC3	B5MD39	225 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	COX7A2P2	O60397	106 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	FSTL3	O95633	263 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	CA7	P43166	264 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	SSBP2	P81877	361 aa	Predicted RBP	12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	ZNF90	Q03938	601 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	MRGPRG-AS1	Q2M3A8	158 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	THAP8	Q8NA92	274 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	FAM167A-AS1	Q96KT0	104 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	SLC25A2	Q9BXI2	301 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	LYNX1	G3V0Z9	82 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	IGLV1-47	P01700	117 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	LYNX1	P0DP58	116 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	SELENOT	P62341	195 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	MMD2	Q8IY49	270 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	GOLT1B	Q9Y3E0	138 aa		12.35	□□□□□ -0.43
CALD1-222	ENST00000495522	SLC17A3	O00476	420 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	ERVFC1-1	P60608	527 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	YPEL3	P61236	119 aa	Predicted RBP	12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	SUMO1	P63165	101 aa	Known RBP	12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	UBE2L3	P68036	154 aa	Known RBP	12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	PRSS8	Q16651	343 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	C10orf113	Q5VZT2	155 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	ZNF841	Q6ZN19	808 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	OR5AU1	Q8NGC0	362 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	POLE	Q07864	2286 aa		12.34	□□□□□ -0.43
CALD1-222	ENST00000495522	IGKV1D-37	A0A075B6S9	117 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	TRAV5	A0A0B4J249	113 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	REG1A	P05451	166 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	TIGIT	Q495A1	244 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	MORN5	Q5VZ52	161 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	ETFRF1	Q6IPR1	90 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	CLEC7A	Q9BXN2	247 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	RAX	Q9Y2V3	346 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	TLN1	Q9Y490	2541 aa	Known RBP	12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	PTPRQ	Q9UMZ3	2332 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	IGLC7	A0M8Q6	106 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	DLEU1	O43261	78 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	RBP4	P02753	201 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	GRN	P28799	593 aa	Known RBP	12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	RPL27A	P46776	148 aa	Known RBP	12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	OR5I1	Q13606	314 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	JOSD1	Q15040	202 aa	Predicted RBP	12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	RPEL1	Q2QD12	228 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	ZNF672	Q499Z4	452 aa	Predicted RBP	12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	ZNF355P	Q9NSJ1	428 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	INSIG2	Q9Y5U4	225 aa		12.33	□□□□□ -0.44
CALD1-222	ENST00000495522	IGHV1-3	A0A0C4DH29	117 aa		12.32	□□□□□ -0.44
CALD1-222	ENST00000495522	BUB1B-PAK6	H3BSN5	160 aa		12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms