RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 AP3S2P59780 193 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 PVRIGQ6DKI7 326 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 RNF2Q99496 336 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 HEYLQ9NQ87 328 aaPredicted RBP13.16□□□□□ -0.3
COL9A3-212ENST00000481800 CACFD1Q9UGQ2 172 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 TMEM56-RWDD3S4R434 201 aa13.16□□□□□ -0.3
COL9A3-212ENST00000481800 KMT2CQ8NEZ4 4911 aaKnown RBP13.15□□□□□ -0.3
COL9A3-212ENST00000481800 CEBPZOSA8MTT3 80 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 TMEM50AO95807 157 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 ANXA3P12429 323 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 HTR2BP41595 481 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 AARDQ4LEZ3 155 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 TOMM20LQ6UXN7 152 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 ZNF600Q6ZNG1 722 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 TOMM5Q8N4H5 51 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 IL22RA2Q969J5 263 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 GALNT14Q96FL9 552 aa13.15□□□□□ -0.3
COL9A3-212ENST00000481800 PUS1Q9Y606 427 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL9A3-212ENST00000481800 RPS10-NUDT3A0A1W2PQS6 291 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 SULT1A3P0DMM9 295 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 SULT1A4P0DMN0 295 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 TMEM187Q14656 261 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 TMEM230Q96A57 120 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 ZNF414Q96IQ9 312 aa13.14□□□□□ -0.31
COL9A3-212ENST00000481800 IGKV3-7A0A075B6H7 116 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 IGHV3OR16-13A0A075B7E8 117 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 IGHV3-74A0A0B4J1X5 117 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 CLN5O75503 358 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 CD5P06127 495 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 TFPI2P48307 235 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 APOC4P55056 127 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 CMC4P56277 68 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-212ENST00000481800 PAFAH1B2P68402 229 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 BSXQ3C1V8 233 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 OR4X1Q8NH49 305 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 IL17DQ8TAD2 202 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 FNDC4Q9H6D8 234 aaPredicted RBP13.13□□□□□ -0.31
COL9A3-212ENST00000481800 PRR13Q9NZ81 148 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 NBEAL2Q6ZNJ1 2754 aa13.13□□□□□ -0.31
COL9A3-212ENST00000481800 SRPXP78539 464 aa13.12□□□□□ -0.31
COL9A3-212ENST00000481800 KLF9Q13886 244 aaPredicted RBP13.12□□□□□ -0.31
COL9A3-212ENST00000481800 MLANAQ16655 118 aa13.12□□□□□ -0.31
COL9A3-212ENST00000481800 ODF3L2Q3SX64 289 aa13.12□□□□□ -0.31
COL9A3-212ENST00000481800 NOXA1Q86UR1 476 aa13.12□□□□□ -0.31
COL9A3-212ENST00000481800 LGI3Q8N145 548 aa13.12□□□□□ -0.31
COL9A3-212ENST00000481800 TRAV30A0A087WSZ9 112 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 PIGBOS1A0A0B4J2F0 54 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 NXPH3O95157 252 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 CCR6P51684 374 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 C2orf83Q53S99 150 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 TCF24Q7RTU0 167 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 TMED4Q7Z7H5 227 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 GBGT1Q8N5D6 347 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 SLC24A4Q8NFF2 622 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 RNASEH2CQ8TDP1 164 aaKnown RBP13.11□□□□□ -0.31
COL9A3-212ENST00000481800 TRIM63Q969Q1 353 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 TMEM231Q9H6L2 316 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 MRPL36Q9P0J6 103 aaKnown RBP13.11□□□□□ -0.31
COL9A3-212ENST00000481800 V9GYH0 126 aa13.11□□□□□ -0.31
COL9A3-212ENST00000481800 A0A0B4J2A0 478 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 A0A1B0GU03 582 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 SLC25A4P12235 298 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 NPPCP23582 126 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 RPL11P62913 178 aaKnown RBP13.1□□□□□ -0.31
COL9A3-212ENST00000481800 SUPT4H1P63272 117 aaKnown RBP13.1□□□□□ -0.31
COL9A3-212ENST00000481800 SMCO1Q147U7 214 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 ETFRF1Q6IPR1 90 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 LYZL2Q7Z4W2 148 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 ST8SIA2Q92186 375 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 NARS2Q96I59 477 aaKnown RBP13.1□□□□□ -0.31
COL9A3-212ENST00000481800 ZFAND3Q9H8U3 227 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 SHPKQ9UHJ6 478 aa13.1□□□□□ -0.31
COL9A3-212ENST00000481800 IGHV3-66A0A0C4DH42 116 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 A0A1W2PS18 150 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 DNASE2O00115 360 aaPredicted RBP13.09□□□□□ -0.31
COL9A3-212ENST00000481800 UBE2CO00762 179 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 IFNA10P01566 189 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 NPY1RP25929 384 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 NMSQ5H8A3 153 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 SPANXN2Q5MJ10 180 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 FAM90A2PQ658T7 463 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 WFDC3Q8IUB2 231 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 APRG1Q8IVJ8 170 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 STPG3Q8N7X2 389 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 DEDD2Q8WXF8 326 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 METTL26Q96S19 204 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 OVOL2Q9BRP0 275 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 RBM38Q9H0Z9 239 aaKnown RBP13.09□□□□□ -0.31
COL9A3-212ENST00000481800 VSIRQ9H7M9 311 aa13.09□□□□□ -0.31
COL9A3-212ENST00000481800 KIR2DL5BA0A0G2JN68 375 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 KIR2DL5BA0A0G2JPC4 375 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 ZNF701M0R085 212 aaPredicted RBP13.08□□□□□ -0.32
COL9A3-212ENST00000481800 DFFBO76075 338 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 APOHP02749 345 aaPredicted RBP13.08□□□□□ -0.32
COL9A3-212ENST00000481800 RPL35AP18077 110 aaKnown RBP13.08□□□□□ -0.32
COL9A3-212ENST00000481800 RND2P52198 227 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 TNFRSF9Q07011 255 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 ZNF79Q15937 498 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 TIGITQ495A1 244 aa13.08□□□□□ -0.32
COL9A3-212ENST00000481800 TMEM128Q5BJH2 165 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms