RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CORTO00230 105 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 IGHV3-23P01764 117 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 HTR2BP41595 481 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 SLURP1P55000 103 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 PVRIGQ6DKI7 326 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 ACSM6Q6P461 480 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 C12orf45Q8N5I9 185 aaPredicted RBP9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 SLC24A4Q8NFF2 622 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 ZNF502Q8TBZ5 544 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 DTD1Q8TEA8 209 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 MISP3Q96FF7 219 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 HIPK2Q9H2X6 1198 aa9.07□□□□□ -0.96
SQSTM1-206ENST00000466342 SNRPGP15A8MWD9 76 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 I3L2K1 104 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 BMPR1BO00238 502 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 SAP30O75446 220 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 MED6O75586 246 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 SPNP16150 400 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 C2orf83Q53S99 150 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 CLEC19AQ6UXS0 136 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 UXS1Q8NBZ7 420 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 OR4D5Q8NGN0 318 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 SCARB1Q8WTV0 552 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 OR10C1Q96KK4 312 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 OR4C12Q96R67 309 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 ATP6V0BQ99437 205 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 C21orf62Q9NYP8 219 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 KIAA1109Q2LD37 5005 aa9.06□□□□□ -0.96
SQSTM1-206ENST00000466342 IGHV3-21A0A0B4J1V1 117 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 PPP5D1E7EU14 171 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 CCSO14618 274 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 SYNGR2O43760 224 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 MT-CO2P00403 227 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 NPY1RP25929 384 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 GPR183P32249 361 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 ARL3P36405 182 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 ID3Q02535 119 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 RPEL1Q2QD12 228 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 IAH1Q2TAA2 248 aaPredicted RBP9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 IL17DQ8TAD2 202 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 PINX1Q96BK5 328 aaKnown RBP9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 ELOVL1Q9BW60 279 aa9.05□□□□□ -0.96
SQSTM1-206ENST00000466342 F8W735 103 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 GGCTO75223 188 aaKnown RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 IFNA10P01566 189 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 CLEC3BP05452 202 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 OPRK1P41145 380 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 NKX2-1P43699 371 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 ATP5IP56385 69 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 KLF5Q13887 457 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 NOXA1Q86UR1 476 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 ZBTB8BQ8NAP8 495 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 RNASEH2CQ8TDP1 164 aaKnown RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 TMEM170AQ8WVE7 144 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 CIB3Q96Q77 187 aaPredicted RBP9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 MAGT1Q9H0U3 335 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 U3KQ87 197 aa9.04□□□□□ -0.96
SQSTM1-206ENST00000466342 C5orf51A6NDU8 294 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 OR2T8A6NH00 312 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 WRBO00258 174 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 TGOLN2O43493 480 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 IAPPP10997 89 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 FCGR2BP31994 310 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 MFAP4P55083 255 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 SYNJ2BPP57105 145 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 POLR2GP62487 172 aaKnown RBP eCLIP9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 Q56UQ5 140 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 SPSB3Q6PJ21 355 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 GSG1LQ6UXU4 331 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 UBAC2Q8NBM4 344 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 BSCL2Q96G97 398 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 TXN2Q99757 166 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 FNDC4Q9H6D8 234 aaPredicted RBP9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 ZC4H2Q9NQZ6 224 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 GSKIPQ9P0R6 139 aa9.03□□□□□ -0.96
SQSTM1-206ENST00000466342 RPS10-NUDT3A0A1W2PQS6 291 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 C7orf66A4D0T2 115 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 FAM25EA8MYX2 175 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 OR2C1O95371 312 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 SCGB1D2O95969 90 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 IGHV3-48P01763 117 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 GP9P14770 177 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 TATDN3Q17R31 274 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 RGS21Q2M5E4 152 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 GPHB5Q86YW7 130 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 OR9G4Q8NGQ1 327 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 GATAD1Q8WUU5 269 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 C2orf50Q96LR7 162 aa9.02□□□□□ -0.97
SQSTM1-206ENST00000466342 DNAH10Q8IVF4 4471 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 KMT2AQ03164 3969 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 C15orf62A8K5M9 175 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 LGALS9O00182 355 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 GOSR2O14653 212 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 SSSCA1O60232 199 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 GNG7O60262 68 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 IGLV1-51P01701 117 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 NPBWR1P48145 328 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 RPP30P78346 268 aaKnown RBP9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 ETFRF1Q6IPR1 90 aa9.01□□□□□ -0.97
SQSTM1-206ENST00000466342 LINC00476Q8WZB0 136 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms