RNA–Protein interactions for RNA: ENST00000454350.5

UBE2D4-208, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), human

TSL 2

Gene UBE2D4, Length 789 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D4-208	ENST00000454350	CCDC71L	Q8N9Z2	235 aa		13.58	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GINS3	Q9BRX5	216 aa		13.58	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CSTL1	Q9H114	145 aa		13.58	□□□□□ -0.24
UBE2D4-208	ENST00000454350	IGHV3-66	A0A0C4DH42	116 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	NUPR2	A6NF83	97 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	DFFB	O76075	338 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	RPL5	P46777	297 aa	Known RBP	13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CMC4	P56277	68 aa	Predicted RBP	13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	TRIM16L	Q309B1	348 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SCGB2B2	Q4G0G5	96 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	C15orf40	Q8WUR7	153 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	TMEM222	Q9H0R3	208 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	MS4A6A	Q9H2W1	248 aa		13.57	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CORT	O00230	105 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CLN5	O75503	358 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	B3GALNT1	O75752	331 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	ATG12	O94817	140 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	IGKV1-17	P01599	117 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CD5	P06127	495 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	OR5AC1	P0C628	307 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SSBP1	Q04837	148 aa	Known RBP	13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	OR4X1	Q8NH49	305 aa		13.56	□□□□□ -0.24
UBE2D4-208	ENST00000454350	TRAV2	A0A0B4J234	112 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	MPTX1	A8MV57	137 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	HOXA1	P49639	335 aa	Predicted RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SUB1	P53999	127 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	MRPS10	P82664	201 aa	Known RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SELENOH	Q8IZQ5	122 aa	Known RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	OR52E5	Q8NH55	327 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	TMEM170A	Q8WVE7	144 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SMIM4	Q8WVI0	70 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	RRNAD1	Q96FB5	475 aa	Known RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	MRPS26	Q9BYN8	205 aa	Known RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	C6orf62	Q9GZU0	229 aa	Predicted RBP	13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	NAA60	Q9H7X0	242 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GPR132	Q9UNW8	380 aa		13.55	□□□□□ -0.24
UBE2D4-208	ENST00000454350	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CTDSPL	O15194	276 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CRYBB3	P26998	211 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SPCS3	P61009	180 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	MEF2D	Q14814	521 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	FAM219A	Q8IW50	185 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	OR4C16	Q8NGL9	310 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GATAD1	Q8WUU5	269 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GPR146	Q96CH1	333 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	PDCD10	Q9BUL8	212 aa		13.54	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CRYM-AS1	A6NIL9	109 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	RGS5	O15539	181 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	LY6G6C	O95867	125 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GIG44	P09565	113 aa	Predicted RBP	13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	OPRK1	P41145	380 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	DEFB131A	P59861	70 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	PAFAH1B2	P68402	229 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	SURF2	Q15527	256 aa	Predicted RBP	13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	LEMD1	Q68G75	181 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	GPR141	Q7Z602	305 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	DYNC2LI1	Q8TCX1	351 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	RBPMS	Q93062	196 aa	Known RBP	13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350		U3KQE9	123 aa		13.53	□□□□□ -0.24
UBE2D4-208	ENST00000454350	VPS13D	Q5THJ4	4388 aa		13.52	□□□□□ -0.24
UBE2D4-208	ENST00000454350		K7EQG2	157 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	NPPC	P23582	126 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TIGIT	Q495A1	244 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM217	Q8N7C4	229 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	RARRES2	Q99969	163 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	CACNG5	Q9UF02	275 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	C14orf166	Q9Y224	244 aa	Known RBP	13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM56-RWDD3	S4R434	201 aa		13.52	□□□□□ -0.25
UBE2D4-208	ENST00000454350	IGLC1	P0CG04	106 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	AKAIN1	P0CW23	69 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	HTR2B	P41595	481 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	C2orf83	Q53S99	150 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	PRSS54	Q6PEW0	395 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	OR11H2	Q8NH07	326 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	RNASE11	Q8TAA1	199 aa	Known RBP	13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	DCANP1	Q8TF63	244 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	PHLDA1	Q8WV24	401 aa	Predicted RBP	13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM230	Q96A57	120 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	C11orf68	Q9H3H3	251 aa	Known RBP	13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	ENY2	Q9NPA8	101 aa		13.51	□□□□□ -0.25
UBE2D4-208	ENST00000454350	ANKRD20A5P	A0PJZ0	165 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	DISC1	C4P0D8	188 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	DNASE2	O00115	360 aa	Predicted RBP	13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	P2RY1	P47900	373 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	DHODH	Q02127	395 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	RBMS2	Q15434	407 aa	Known RBP	13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM268	Q5VZI3	342 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	OR51S1	Q8NGJ8	323 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	METTL26	Q96S19	204 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	SOST	Q9BQB4	213 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM231	Q9H6L2	316 aa		13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	CCDC59	Q9P031	241 aa	Known RBP	13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350	KLK5	Q9Y337	293 aa	Predicted RBP	13.5	□□□□□ -0.25
UBE2D4-208	ENST00000454350		A0A1W2PS18	150 aa		13.49	□□□□□ -0.25
UBE2D4-208	ENST00000454350	GSTZ1	O43708	216 aa	Predicted RBP	13.49	□□□□□ -0.25
UBE2D4-208	ENST00000454350	NXPH3	O95157	252 aa		13.49	□□□□□ -0.25
UBE2D4-208	ENST00000454350	CA1	P00915	261 aa	Predicted RBP	13.49	□□□□□ -0.25
UBE2D4-208	ENST00000454350	RPL11	P62913	178 aa	Known RBP	13.49	□□□□□ -0.25
UBE2D4-208	ENST00000454350	TMEM187	Q14656	261 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 67 ms