RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 CACFD1Q9UGQ2 172 aa11.61□□□□□ -0.55
LIMS1-210ENST00000449684 UBQLN2Q9UHD9 624 aa11.61□□□□□ -0.55
LIMS1-210ENST00000449684 RPS10-NUDT3A0A1W2PQS6 291 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 SULT1A3P0DMM9 295 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 SULT1A4P0DMN0 295 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 CASC10Q5T4H9 136 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 ZNF600Q6ZNG1 722 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 IL22RA2Q969J5 263 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 OR10C1Q96KK4 312 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 FAM110AQ9BQ89 295 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 TMEM56-RWDD3S4R434 201 aa11.6□□□□□ -0.55
LIMS1-210ENST00000449684 IGKV3-7A0A075B6H7 116 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 IGHV3OR16-13A0A075B7E8 117 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 IGHV3-74A0A0B4J1X5 117 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 PIGBOS1A0A0B4J2F0 54 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 CHEK1O14757 476 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 NXPH3O95157 252 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TMEM50AO95807 157 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TFPI2P48307 235 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 PAFAH1B2P68402 229 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TMEM187Q14656 261 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 SPANXN2Q5MJ10 180 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 ZFAND6Q6FIF0 208 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TOMM20LQ6UXN7 152 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TMED4Q7Z7H5 227 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 TMEM230Q96A57 120 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 GALNT14Q96FL9 552 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 RNF2Q99496 336 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 EDA2RQ9HAV5 297 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 PRR13Q9NZ81 148 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 PUS1Q9Y606 427 aaKnown RBP eCLIP11.59□□□□□ -0.55
LIMS1-210ENST00000449684 DNAH7Q8WXX0 4024 aa11.59□□□□□ -0.55
LIMS1-210ENST00000449684 INPP1P49441 399 aa11.58□□□□□ -0.56
LIMS1-210ENST00000449684 CMC4P56277 68 aaPredicted RBP11.58□□□□□ -0.56
LIMS1-210ENST00000449684 RPL11P62913 178 aaKnown RBP11.58□□□□□ -0.56
LIMS1-210ENST00000449684 SRPXP78539 464 aa11.58□□□□□ -0.56
LIMS1-210ENST00000449684 NOXA1Q86UR1 476 aa11.58□□□□□ -0.56
LIMS1-210ENST00000449684 LGI3Q8N145 548 aa11.58□□□□□ -0.56
LIMS1-210ENST00000449684 KMT2CQ8NEZ4 4911 aaKnown RBP11.58□□□□□ -0.56
LIMS1-210ENST00000449684 TRAV30A0A087WSZ9 112 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 A0A0B4J2A0 478 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 CLN5O75503 358 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 CD5P06127 495 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 CCR6P51684 374 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 APOC4P55056 127 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 KLF9Q13886 244 aaPredicted RBP11.57□□□□□ -0.56
LIMS1-210ENST00000449684 AARDQ4LEZ3 155 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 SLC24A4Q8NFF2 622 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 OR4X1Q8NH49 305 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 NARS2Q96I59 477 aaKnown RBP11.57□□□□□ -0.56
LIMS1-210ENST00000449684 TMEM231Q9H6L2 316 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 SHPKQ9UHJ6 478 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 V9GYH0 126 aa11.57□□□□□ -0.56
LIMS1-210ENST00000449684 ZNF701M0R085 212 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-210ENST00000449684 DNASE2O00115 360 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-210ENST00000449684 IFNA10P01566 189 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 NPPCP23582 126 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 VAMP1P23763 118 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 SMCO1Q147U7 214 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 MLANAQ16655 118 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 C2orf83Q53S99 150 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 PVRIGQ6DKI7 326 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 ETFRF1Q6IPR1 90 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 TCF24Q7RTU0 167 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 LYZL2Q7Z4W2 148 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 GBGT1Q8N5D6 347 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 OR1S1Q8NH92 325 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 IL17DQ8TAD2 202 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 RNASEH2CQ8TDP1 164 aaKnown RBP11.56□□□□□ -0.56
LIMS1-210ENST00000449684 TRIM63Q969Q1 353 aa11.56□□□□□ -0.56
LIMS1-210ENST00000449684 SLC25A21Q9BQT8 299 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-210ENST00000449684 FNDC4Q9H6D8 234 aaPredicted RBP11.56□□□□□ -0.56
LIMS1-210ENST00000449684 IGHV3-66A0A0C4DH42 116 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 A0A1W2PS18 150 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 SLC25A4P12235 298 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 NPY1RP25929 384 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 BSXQ3C1V8 233 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 CCDC190Q86UF4 302 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 WFDC3Q8IUB2 231 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 DEDD2Q8WXF8 326 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 ST8SIA2Q92186 375 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 METTL26Q96S19 204 aa11.55□□□□□ -0.56
LIMS1-210ENST00000449684 RBM38Q9H0Z9 239 aaKnown RBP11.55□□□□□ -0.56
LIMS1-210ENST00000449684 RPL35AP18077 110 aaKnown RBP11.54□□□□□ -0.56
LIMS1-210ENST00000449684 SUPT4H1P63272 117 aaKnown RBP11.54□□□□□ -0.56
LIMS1-210ENST00000449684 TNFRSF9Q07011 255 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 ZNF79Q15937 498 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 ODF3L2Q3SX64 289 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 TIGITQ495A1 244 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 TMEM128Q5BJH2 165 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 TRIQKQ629K1 86 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 STPG3Q8N7X2 389 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 DTD1Q8TEA8 209 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 Q8WTZ3 238 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 MRPL36Q9P0J6 103 aaKnown RBP11.54□□□□□ -0.56
LIMS1-210ENST00000449684 U3KQ87 197 aa11.54□□□□□ -0.56
LIMS1-210ENST00000449684 A0A1B0GU03 582 aa11.53□□□□□ -0.56
LIMS1-210ENST00000449684 UBE2CO00762 179 aa11.53□□□□□ -0.56
LIMS1-210ENST00000449684 APOHP02749 345 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-210ENST00000449684 IFNA4P05014 189 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms