RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 LINC00312Q9Y6C7 94 aa13.31□□□□□ -0.28
CLCNKA-203ENST00000439316 PPOXP50336 477 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 MLANAQ16655 118 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 TMEM136Q6ZRR5 245 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 OR5AU1Q8NGC0 362 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 OR10W1Q8NGF6 305 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 ZNF714Q96N38 554 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 MRPL20Q9BYC9 149 aaKnown RBP13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 GNB4Q9HAV0 340 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 NDUFA4L2Q9NRX3 87 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 DCAF16Q9NXF7 216 aa13.3□□□□□ -0.28
CLCNKA-203ENST00000439316 PLCE1Q9P212 2302 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 INS-IGF2F8WCM5 200 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 TCAPO15273 167 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 MRPL52Q86TS9 123 aaKnown RBP13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 CACNG8Q8WXS5 425 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 RND1Q92730 232 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 FAM167A-AS1Q96KT0 104 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 SLC25A2Q9BXI2 301 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 TNCP24821 2201 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 SMIM27A0A1W2PRY6 76 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 APOA2P02652 100 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 IRF2P14316 349 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 CDKN1AP38936 164 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 SUMO1P63165 101 aaKnown RBP13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 FXYD3Q14802 87 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 RNF2Q99496 336 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 NAT8BQ9UHF3 227 aa13.29□□□□□ -0.28
CLCNKA-203ENST00000439316 ICE1Q9Y2F5 2266 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 TMEM8BA6NDV4 472 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 NKX6-3A6NJ46 265 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 H0YJW9 148 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 CD40P25942 277 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 COMPP49747 757 aaPredicted RBP13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 OR10J3Q5JRS4 329 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 C22orf34Q6ZV56 151 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 HARBI1Q96MB7 349 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 SAMD10Q9BYL1 202 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 GAL3ST2Q9H3Q3 398 aa13.28□□□□□ -0.28
CLCNKA-203ENST00000439316 TMEM177Q53S58 311 aa13.27□□□□□ -0.28
CLCNKA-203ENST00000439316 MORN5Q5VZ52 161 aa13.27□□□□□ -0.28
CLCNKA-203ENST00000439316 NUP37Q8NFH4 326 aa13.27□□□□□ -0.28
CLCNKA-203ENST00000439316 VKORC1Q9BQB6 163 aa13.27□□□□□ -0.28
CLCNKA-203ENST00000439316 COMMD5Q9GZQ3 224 aa13.27□□□□□ -0.28
CLCNKA-203ENST00000439316 DYSFO75923 2080 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 AMY1AP04745 511 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 CHRNB4P30926 498 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 BRS3P32247 399 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 RPL8P62917 257 aaKnown RBP13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 UBE2L3P68036 154 aaKnown RBP13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 MEF2CQ06413 473 aaPredicted RBP13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 TMEM183BQ1AE95 376 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 TDRG1Q3Y452 100 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 IBA57Q5T440 356 aaKnown RBP13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 OR5AN1Q8NGI8 311 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 CDC42EP3Q9UKI2 254 aa13.27□□□□□ -0.29
CLCNKA-203ENST00000439316 SPINK4O60575 86 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 GPX1P07203 203 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 SFTPCP11686 197 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 TCL1AP56279 114 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 ERHP84090 104 aaKnown RBP13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 OR2T6Q8NHC8 308 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 MIEN1Q9BRT3 115 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 ATG101Q9BSB4 218 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 FBXL7Q9UJT9 491 aa13.26□□□□□ -0.29
CLCNKA-203ENST00000439316 TRAV5A0A0B4J249 113 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 A0A1W2PN81 502 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 HLA-DQA1P01909 254 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 MGST1P10620 155 aaKnown RBP13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 USF1P22415 310 aaPredicted RBP13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 CASP6P55212 293 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 SIGLECL1Q8N7X8 197 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 OR4A5Q8NH83 315 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 TMEM167AQ8TBQ9 72 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 KCNS1Q96KK3 526 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 DNAJC4Q9NNZ3 241 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 JKAMPQ9P055 326 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 RNF114Q9Y508 228 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 YLPM1P49750 1951 aaKnown RBP13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 ROS1P08922 2347 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 BMPR1BO00238 502 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 SSBP2P81877 361 aaPredicted RBP13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 VN1R17PQ8TDU5 208 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 VAMP8Q9BV40 100 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF586Q9NXT0 402 aa13.25□□□□□ -0.29
CLCNKA-203ENST00000439316 IGSF10Q6WRI0 2623 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 USP24Q9UPU5 2620 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 IZUMO1RA6ND01 250 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 CGB1A6NKQ9 187 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 E7EUB6 86 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 M0QZK8 103 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 FCN3O75636 299 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 CCL3L1P16619 93 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 CA7P43166 264 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 SLC35B1P78383 322 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF705AQ6ZN79 300 aaPredicted RBP13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 Q8N976 141 aa13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 FLYWCH2Q96CP2 140 aaKnown RBP13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 ZNF430Q9H8G1 570 aaPredicted RBP13.24□□□□□ -0.29
CLCNKA-203ENST00000439316 C16orf97H3BN30 126 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms