RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SCGB2B2Q4G0G5 96 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 CCDC71LQ8N9Z2 235 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 C2CD4CQ8TF44 421 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 TMEM230Q96A57 120 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 RRNAD1Q96FB5 475 aaKnown RBP10.61□□□□□ -0.71
SDC1-204ENST00000429035 ZNF486Q96H40 463 aaPredicted RBP10.61□□□□□ -0.71
SDC1-204ENST00000429035 EXTL2Q9UBQ6 330 aa10.61□□□□□ -0.71
SDC1-204ENST00000429035 A0A0B4J293 547 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 A0A1W2PS18 150 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 KNCNA6PVL3 124 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 TMEM50AO95807 157 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 CD3DP04234 171 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 NPPCP23582 126 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 P2RY1P47900 373 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 RORCP51449 518 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 MZT2AQ6P582 158 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 OR52I2Q8NH67 350 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 MRPL36Q9P0J6 103 aaKnown RBP10.6□□□□□ -0.71
SDC1-204ENST00000429035 KLK11Q9UBX7 282 aa10.6□□□□□ -0.71
SDC1-204ENST00000429035 TRAV2A0A0B4J234 112 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 A0A0G2JRQ6 117 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 IGLL5B9A064 214 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 CLN5O75503 358 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 TIGITQ495A1 244 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 LHFPL1Q86WI0 220 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 ARRDC1Q8N5I2 433 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 OR13C8Q8NGS7 320 aa10.59□□□□□ -0.71
SDC1-204ENST00000429035 FNDC4Q9H6D8 234 aaPredicted RBP10.59□□□□□ -0.71
SDC1-204ENST00000429035 IGHV4-28A0A0C4DH34 117 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 P0C879 139 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 C4BPBP20851 252 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 MLANAQ16655 118 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 ACTL10Q5JWF8 245 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 CENPSQ8N2Z9 138 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 OR4D10Q8NGI6 311 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 ZFAND1Q8TCF1 268 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 MARCH1Q8TCQ1 289 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 AP3S1Q92572 193 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 GRAMD2BQ96HH9 432 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 CLEC5AQ9NY25 188 aa10.58□□□□□ -0.72
SDC1-204ENST00000429035 RPS10-NUDT3A0A1W2PQS6 291 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 K7EQG2 157 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 NXPH3O95157 252 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 RAB3DO95716 219 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 TBPP20226 339 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 FAAP20Q6NZ36 180 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 TRPT1Q86TN4 253 aaKnown RBP10.57□□□□□ -0.72
SDC1-204ENST00000429035 Q8NAQ8 132 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 OR4X1Q8NH49 305 aa10.57□□□□□ -0.72
SDC1-204ENST00000429035 NAA50Q9GZZ1 169 aaKnown RBP10.57□□□□□ -0.72
SDC1-204ENST00000429035 C14orf166Q9Y224 244 aaKnown RBP10.57□□□□□ -0.72
SDC1-204ENST00000429035 TEX13DA0A0J9YY54 714 aaPredicted RBP10.56□□□□□ -0.72
SDC1-204ENST00000429035 INS-IGF2F8WCM5 200 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 OR5AC1P0C628 307 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 SPP1P10451 314 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 UCP1P25874 307 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 EIF2B2P49770 351 aaKnown RBP10.56□□□□□ -0.72
SDC1-204ENST00000429035 RND2P52198 227 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 TAS2R19P59542 299 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 PRR20EP86478 221 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 PRR20CP86479 221 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 PRR20DP86480 221 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 PRR20BP86481 221 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 PRR20AP86496 221 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 DHRS2Q13268 280 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 MORN3Q6PF18 240 aaPredicted RBP10.56□□□□□ -0.72
SDC1-204ENST00000429035 HEYLQ9NQ87 328 aaPredicted RBP10.56□□□□□ -0.72
SDC1-204ENST00000429035 MTFP1Q9UDX5 166 aa10.56□□□□□ -0.72
SDC1-204ENST00000429035 DNAH10Q8IVF4 4471 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 CEBPZOSA8MTT3 80 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 HNRNPCP07910 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
SDC1-204ENST00000429035 RBMY1A1P0DJD3 496 aaKnown RBP10.55□□□□□ -0.72
SDC1-204ENST00000429035 RBMY1CP0DJD4 496 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 CRYBB3P26998 211 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 HLA-DMBP28068 263 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 RBMY1FQ15415 496 aaKnown RBP10.55□□□□□ -0.72
SDC1-204ENST00000429035 PSMG4Q5JS54 123 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 STEAP1BQ6NZ63 245 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 OR1S2Q8NGQ3 325 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 CACNG5Q9UF02 275 aa10.55□□□□□ -0.72
SDC1-204ENST00000429035 TRAV30A0A087WSZ9 112 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 HELTA6NFD8 242 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 C11orf94C9JXX5 98 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 RGS5O15539 181 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 IGKV1-17P01599 117 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 MIFP14174 115 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 ZNF182P17025 639 aaPredicted RBP10.54□□□□□ -0.72
SDC1-204ENST00000429035 OR10J1P30954 320 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 HTR2BP41595 481 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 SPCS3P61009 180 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 TMEM41BQ5BJD5 291 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 PVRIGQ6DKI7 326 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 Q6ZRM9 215 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 Q6ZTC4 211 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 TMEM229BQ8NBD8 167 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 SLC24A4Q8NFF2 622 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 TERB2Q8NHR7 220 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 DCANP1Q8TF63 244 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 ABHD1Q96SE0 405 aa10.54□□□□□ -0.72
SDC1-204ENST00000429035 NAA60Q9H7X0 242 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms