RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 NPIPB11E5RHQ5 1161 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 LEPP41159 167 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 FAM214BQ7L5A3 538 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 BRWD3Q6RI45 1802 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 TCF20Q9UGU0 1960 aaKnown RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 SPACA3Q8IXA5 215 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 ZNF474Q6S9Z5 364 aaPredicted RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 F8W1H4 67 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DEFB133Q30KQ1 61 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 APOHP02749 345 aaPredicted RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 TMEM215Q68D42 235 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 RPP25LQ8N5L8 163 aaKnown RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 FGF21Q9NSA1 209 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 IBA57Q5T440 356 aaKnown RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 ZNHIT1O43257 154 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 CD40P25942 277 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 C17orf51A8MQB3 221 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DEFB119Q8N690 84 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 LILRA5A6NI73 299 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 EGR4Q05215 589 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 UFSP1Q6NVU6 142 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 TMEM126AQ9H061 195 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 THAP10Q9P2Z0 257 aaPredicted RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DOPEY2Q9Y3R5 2298 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 PSG2P11465 335 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 SERF2P84101 59 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 S1PR3Q99500 378 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 LINC00310P59036 64 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 LAMTOR5O43504 91 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 YPEL3P61236 119 aaPredicted RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 ERVK11-1P61568 191 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 RIGQ13278 110 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 RS1O15537 224 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DOCK8Q8NF50 2099 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 CADP27708 2225 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 CHAC1Q9BUX1 264 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 WNK1Q9H4A3 2382 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 TRACP01848 142 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 ZNF688P0C7X2 276 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 OR2J3O76001 311 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 XGP55808 180 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 OR5AS1Q8N127 324 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 CNEP1R1Q8N9A8 125 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DEFB108AA8MXU0 73 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 SCTP09683 121 aa2.85□□□□□ -1.95
SYNE1-212ENST00000423061 HMGA1P17096 107 aaKnown RBP2.85□□□□□ -1.95
SYNE1-212ENST00000423061 DUX3Q96PT4 197 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 MED13Q9UHV7 2174 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 ZGRF1Q86YA3 2104 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 LINC00312Q9Y6C7 94 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 NCBP2LA6PVI3 153 aaKnown RBP2.84□□□□□ -1.95
SYNE1-212ENST00000423061 SCRG1O75711 98 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 RPL35AP18077 110 aaKnown RBP2.84□□□□□ -1.95
SYNE1-212ENST00000423061 SIGLEC8Q9NYZ4 499 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 KIF26AQ9ULI4 1882 aaPredicted RBP2.84□□□□□ -1.95
SYNE1-212ENST00000423061 WDR87Q6ZQQ6 2873 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 FOXC2Q99958 501 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 TM2D1Q9BX74 207 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 CGAP01215 116 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 CACNG7P62955 275 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 C5orf63A6NC05 138 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 NKX2-2O95096 273 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 F11P03951 625 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 LRRC29Q8WV35 223 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 H0YIG0 161 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 FXYD2P54710 66 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 CENPVL3A0A0U1RRI6 287 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 V9GYY9 64 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 MPDU1O75352 247 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 FOXI2Q6ZQN5 318 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 J3QLI3 93 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 H1FXQ92522 213 aaKnown RBP2.84□□□□□ -1.95
SYNE1-212ENST00000423061 BADQ92934 168 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 USF3Q68DE3 2245 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 Q6ZR03 302 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 HERVK_113P63121 156 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 DOCK7Q96N67 2140 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 TRAV9-1A0A075B6T8 112 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 OSR2Q8N2R0 312 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 LINC00479Q96M42 142 aa2.84□□□□□ -1.95
SYNE1-212ENST00000423061 FAM236AA0A1B0GUQ0 79 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 FAM236BA0A1B0GV22 79 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 PPYP01298 95 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 LINC00596Q86U02 117 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 AAMDCQ9H7C9 122 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 INTS1Q8N201 2190 aaKnown RBP2.84□□□□□ -1.96
SYNE1-212ENST00000423061 IGKV1D-16P01601 117 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 NPPCP23582 126 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 MRAPQ8TCY5 172 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 VWA8A3KMH1 1905 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 GDF5OSQ5U4N7 250 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 IL17RELQ6ZVW7 336 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 CEND1Q8N111 149 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 DLX4Q92988 240 aaPredicted RBP2.84□□□□□ -1.96
SYNE1-212ENST00000423061 FBXL15Q9H469 300 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 F8WDY8 70 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 LINC01590Q5TEZ4 76 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 C4orf26Q17RF5 130 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 DGAT2L7PQ6IED9 249 aa2.84□□□□□ -1.96
SYNE1-212ENST00000423061 P01737 135 aa2.84□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms