RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 RNF126Q9BV68 326 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 CYTL1Q9NRR1 136 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 MRPS18BQ9Y676 258 aaKnown RBP4.46□□□□□ -1.7
SCN1A-201ENST00000303395 R4GN57 208 aa4.46□□□□□ -1.7
SCN1A-201ENST00000303395 ARHGAP21Q5T5U3 1957 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 GDF9O60383 454 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 TIAF1O95411 115 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 Q8NFD4 153 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 RLN3Q8WXF3 142 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF385AQ96PM9 386 aaKnown RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 PEMTQ9UBM1 199 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 HIVEP3Q5T1R4 2406 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 TRAV8-4A0A0B4J246 113 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 A0A1W2PNR3 127 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 TIMP3P35625 211 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 IER3P46695 156 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 MBNL2Q5VZF2 373 aaKnown RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF774Q6NX45 483 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 DEFB123Q8N688 67 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF721Q8TF20 911 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 SIRT4Q9Y6E7 314 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 HCFC1P51610 2035 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 FCN3O75636 299 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 CGB3P0DN86 165 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 EGR2P11161 476 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 TBR1Q16650 682 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 FBXW9Q5XUX1 488 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 OR10D3Q8NH80 312 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 OTORQ9NRC9 128 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 IL36RNQ9UBH0 155 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 HBDP02042 147 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF32P17041 273 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 GPR183P32249 361 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 MORN2Q502X0 79 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF585BQ52M93 769 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 Q6ZS92 163 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 EAF1Q96JC9 268 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 SEMA5BQ9P283 1151 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 BRCA1P38398 1863 aaKnown RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 C2orf16Q68DN1 1984 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 IL18BPO95998 194 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 APELAP0DMC3 54 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 NMSQ5H8A3 153 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 RPRMLQ8N4K4 120 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 EEF1AKMT3Q96AZ1 226 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 RPRMQ9NS64 109 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 CCL21O00585 134 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 STHQ8IWL8 128 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 GPR146Q96CH1 333 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 RTBDNQ9BSG5 229 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-201ENST00000303395 ARRDC1-AS1Q9H2J1 176 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 HS3ST3B1Q9Y662 390 aa4.45□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV1OR21-1A0A087WYE8 117 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV3-15A0A0B4J1V0 119 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ARSAP15289 507 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RPL23P62829 140 aaKnown RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RUNX1Q01196 453 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 SPINK9Q5DT21 86 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 Q6ZSR3 168 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 PLPPR2Q96GM1 343 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 C1orf43Q9BWL3 253 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RPP21Q9H633 154 aaKnown RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ZNF71Q9NQZ8 489 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 H0YIZ8 118 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 YPEL1O60688 119 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 AMBPP02760 352 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 FGF8P55075 233 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ATXN8Q156A1 80 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 MRPL23Q16540 153 aaKnown RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 C8orf31Q8N9H6 132 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 YPEL2Q96QA6 119 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM160Q9NX00 188 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 SOCS1O15524 211 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 GREM1O60565 184 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 DLX4Q92988 240 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ISOC2Q96AB3 205 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 PTPRDP23468 1912 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 A0A0G2JLM5 398 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 A0A1W2PRD5 423 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 A0A1W2PRF3 423 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 A0A1W2PRM7 423 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 IGHV4-39P01824 125 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ATP5J2P56134 94 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 MPV17L2Q567V2 206 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 CBLN3Q6UW01 205 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 GLCCI1Q86VQ1 547 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 MED29Q9NX70 200 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RNF7Q9UBF6 113 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 EML5Q05BV3 1969 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 ASPHD2Q6ICH7 369 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 RHOVQ96L33 236 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 A0A087WX48 190 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 TEX48A0A1B0GUV7 120 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 APOMO95445 188 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 TCTEX1D4Q5JR98 221 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 OR11H6Q8NGC7 330 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 NRN1Q9NPD7 142 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 LHFPL6Q9Y693 200 aa4.44□□□□□ -1.7
SCN1A-201ENST00000303395 TMEM8BA6NDV4 472 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms