RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 PRR20BP86481 221 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 PRR20AP86496 221 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 PLP2Q04941 152 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 SLC35E4Q6ICL7 350 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 SPINK14Q6IE38 97 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 BHLHA15Q7RTS1 189 aaPredicted RBP11.03□□□□□ -0.64
SKA3-201ENST00000298260 ST20Q9HBF5 79 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 FZR1Q9UM11 496 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 OR1C1Q15619 314 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 TMEM108Q6UXF1 575 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 C12orf54Q6X4T0 127 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 HES7Q9BYE0 225 aa11.03□□□□□ -0.64
SKA3-201ENST00000298260 A0A1W2PRE2 83 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 CD5LO43866 347 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 KLF7O75840 302 aaPredicted RBP11.02□□□□□ -0.65
SKA3-201ENST00000298260 GPR183P32249 361 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 ZNF134P52741 427 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 SMIM21Q3B7S5 101 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 C5orf17Q8NAS9 161 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 ZBTB34Q8NCN2 500 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 RTL8AQ9BWD3 113 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 OOEPA6NGQ2 149 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 C19orf67A6NJJ6 358 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 CCL4P13236 92 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 ZNF146Q15072 292 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 C2orf91Q6ZV80 131 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 Q71RC1 249 aaPredicted RBP11.02□□□□□ -0.65
SKA3-201ENST00000298260 NANOS1Q8WY41 292 aaKnown RBP11.02□□□□□ -0.65
SKA3-201ENST00000298260 GNG12Q9UBI6 72 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 PEF1Q9UBV8 284 aaKnown RBP11.02□□□□□ -0.65
SKA3-201ENST00000298260 POLDIP2Q9Y2S7 368 aa11.02□□□□□ -0.65
SKA3-201ENST00000298260 J3QW42 95 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 WISP2O76076 250 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 NCR2O95944 276 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 SP1P08047 785 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 MDP1Q86V88 176 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 HSBP1L1C9JCN9 74 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 LAMTOR5O43504 91 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 TM4SF20Q53R12 229 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 LYSMD4Q5XG99 296 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 C16orf54Q6UWD8 224 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 LINC00322Q6ZN03 302 aaPredicted RBP11.01□□□□□ -0.65
SKA3-201ENST00000298260 TMEM105Q8N8V8 129 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 OR4A5Q8NH83 315 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 NCOR1P1Q9H4R4 102 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 CADP27708 2225 aa11.01□□□□□ -0.65
SKA3-201ENST00000298260 SPENQ96T58 3664 aaKnown RBP11.01□□□□□ -0.65
SKA3-201ENST00000298260 FBLL1A6NHQ2 334 aaKnown RBP11□□□□□ -0.65
SKA3-201ENST00000298260 H3BTX0 84 aa11□□□□□ -0.65
SKA3-201ENST00000298260 TMPRSS3P57727 454 aa11□□□□□ -0.65
SKA3-201ENST00000298260 SSBP2P81877 361 aaPredicted RBP11□□□□□ -0.65
SKA3-201ENST00000298260 PAX2Q02962 417 aa11□□□□□ -0.65
SKA3-201ENST00000298260 Q0VFX4 171 aa11□□□□□ -0.65
SKA3-201ENST00000298260 PGLYRP4Q96LB8 373 aa11□□□□□ -0.65
SKA3-201ENST00000298260 G3V4G9 280 aa11□□□□□ -0.65
SKA3-201ENST00000298260 ARF6P62330 175 aa11□□□□□ -0.65
SKA3-201ENST00000298260 UBE2L3P68036 154 aaKnown RBP11□□□□□ -0.65
SKA3-201ENST00000298260 KLF5Q13887 457 aaPredicted RBP11□□□□□ -0.65
SKA3-201ENST00000298260 COX19Q49B96 90 aa11□□□□□ -0.65
SKA3-201ENST00000298260 UBALD2Q8IYN6 164 aa11□□□□□ -0.65
SKA3-201ENST00000298260 SLC25A40Q8TBP6 338 aa11□□□□□ -0.65
SKA3-201ENST00000298260 OBP2BQ9NPH6 170 aa11□□□□□ -0.65
SKA3-201ENST00000298260 CEP250Q9BV73 2442 aa11□□□□□ -0.65
SKA3-201ENST00000298260 DNPH1O43598 174 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 CD46P15529 392 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 HTR1DP28221 377 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 LGALS7P47929 136 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 FXYD7P58549 80 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 MEF2CQ06413 473 aaPredicted RBP10.99□□□□□ -0.65
SKA3-201ENST00000298260 RAB31Q13636 194 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 PRSS57Q6UWY2 283 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 TMEM186Q96B77 213 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 GTSF1LQ9H1H1 148 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 LOXL2Q9Y4K0 774 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 AMMECR1Q9Y4X0 333 aaPredicted RBP10.99□□□□□ -0.65
SKA3-201ENST00000298260 ERVK-16P61578 105 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 TMEM251Q8N6I4 163 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 ASCL2Q99929 193 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 TMEM167BQ9NRX6 74 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 IDI2-AS1Q9NZ38 188 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 OR4S2Q8NH73 311 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 TMEM191AQ9H0A3 160 aa10.99□□□□□ -0.65
SKA3-201ENST00000298260 OTOGLQ3ZCN5 2332 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 KALRNO60229 2985 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 MPV17P39210 176 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 RPS20P60866 119 aaKnown RBP10.98□□□□□ -0.65
SKA3-201ENST00000298260 HIST1H1AQ02539 215 aaPredicted RBP10.98□□□□□ -0.65
SKA3-201ENST00000298260 UFSP1Q6NVU6 142 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 TMUB1Q9BVT8 246 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 CRXO43186 299 aaPredicted RBP10.98□□□□□ -0.65
SKA3-201ENST00000298260 SMAGPQ0VAQ4 97 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 C1orf210Q8IVY1 113 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 WIPF2Q8TF74 440 aaPredicted RBP10.98□□□□□ -0.65
SKA3-201ENST00000298260 OR2V2Q96R30 315 aa10.98□□□□□ -0.65
SKA3-201ENST00000298260 ZNF292O60281 2723 aa10.97□□□□□ -0.65
SKA3-201ENST00000298260 FABP6P51161 128 aa10.97□□□□□ -0.65
SKA3-201ENST00000298260 RPL24P83731 157 aaKnown RBP10.97□□□□□ -0.65
SKA3-201ENST00000298260 TMEM97Q5BJF2 176 aa10.97□□□□□ -0.65
SKA3-201ENST00000298260 ZNF766Q5HY98 468 aa10.97□□□□□ -0.65
SKA3-201ENST00000298260 OR10W1Q8NGF6 305 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms