RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PFDN5Q99471 154 aa19.24■□□□□ 0.67
TRIM54-201ENST00000296098 DNAJC4Q9NNZ3 241 aa19.24■□□□□ 0.67
TRIM54-201ENST00000296098 LY96Q9Y6Y9 160 aa19.24■□□□□ 0.67
TRIM54-201ENST00000296098 NAV3Q8IVL0 2385 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 IGKV1D-37A0A075B6S9 117 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 C22orf46C9J442 243 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 IGHV3-48P01763 117 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 OR10J4P0C629 311 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 COMPP49747 757 aaPredicted RBP19.23■□□□□ 0.67
TRIM54-201ENST00000296098 S100A12P80511 92 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 ETFRF1Q6IPR1 90 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 OR1L4Q8NGR5 311 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 SLC25A2Q9BXI2 301 aa19.23■□□□□ 0.67
TRIM54-201ENST00000296098 BPIFB3P59826 476 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 SELENOTP62341 195 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 GFI1BQ5VTD9 330 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 PVRIGQ6DKI7 326 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 HCP5Q6MZN7 132 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 TEX38Q6PEX7 206 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 MISP3Q96FF7 219 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 BTF3L4Q96K17 158 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 NIT2Q9NQR4 276 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 MRPL36Q9P0J6 103 aaKnown RBP19.22■□□□□ 0.67
TRIM54-201ENST00000296098 MORN5Q5VZ52 161 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 FAM167A-AS1Q96KT0 104 aa19.22■□□□□ 0.67
TRIM54-201ENST00000296098 LY6LH3BQJ8 138 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 ZNF90Q03938 601 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 ACTL10Q5JWF8 245 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 C10orf113Q5VZT2 155 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 OR10G8Q8NGN5 311 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 NEU4Q8WWR8 484 aaPredicted RBP19.21■□□□□ 0.67
TRIM54-201ENST00000296098 PITPNC1Q9UKF7 332 aa19.21■□□□□ 0.67
TRIM54-201ENST00000296098 A0A1W2PRE2 83 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 GGTLC3B5MD39 225 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 K7EN84 100 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 UBE2L3P68036 154 aaKnown RBP19.2■□□□□ 0.66
TRIM54-201ENST00000296098 FOXL1Q12952 345 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 PDZD11Q5EBL8 140 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 PPP1R27Q86WC6 154 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 EAF1Q96JC9 268 aaPredicted RBP19.2■□□□□ 0.66
TRIM54-201ENST00000296098 GPR61Q9BZJ8 451 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 CRYGCP07315 174 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 CRYBB3P26998 211 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 MFAP2P55001 183 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 OR5AU1Q8NGC0 362 aa19.2■□□□□ 0.66
TRIM54-201ENST00000296098 TRAV5A0A0B4J249 113 aa19.19■□□□□ 0.66
TRIM54-201ENST00000296098 SGMS2Q8NHU3 365 aa19.19■□□□□ 0.66
TRIM54-201ENST00000296098 C22orf15Q8WYQ4 148 aa19.19■□□□□ 0.66
TRIM54-201ENST00000296098 ZNF355PQ9NSJ1 428 aa19.19■□□□□ 0.66
TRIM54-201ENST00000296098 OR1P1Q8NH06 330 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 RNF5Q99942 180 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 HELTA6NFD8 242 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 APELAP0DMC3 54 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 GNG4P50150 75 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 CENPWQ5EE01 88 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 TPTE2P1Q5T6R2 138 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 FBXL15Q9H469 300 aa19.18■□□□□ 0.66
TRIM54-201ENST00000296098 CORTO00230 105 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 PATE2Q6UY27 113 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 TNFRSF19Q9NS68 423 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 A0A0U1RQK1 487 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 ZNF320A2RRD8 509 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 TEX22C9J3V5 150 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 MOSP00540 346 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 ARF6P62330 175 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 SUMO1P63165 101 aaKnown RBP19.17■□□□□ 0.66
TRIM54-201ENST00000296098 LY6DQ14210 128 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 C19orf35Q6ZS72 473 aa19.17■□□□□ 0.66
TRIM54-201ENST00000296098 SSBP3Q9BWW4 388 aaPredicted RBP19.17■□□□□ 0.66
TRIM54-201ENST00000296098 TIMM23O14925 209 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 ATRXP46100 2492 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 DTX2Q86UW9 622 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 TMEM183AQ8IXX5 376 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 OR11H6Q8NGC7 330 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 OR10D4PQ8NGN7 298 aa19.16■□□□□ 0.66
TRIM54-201ENST00000296098 F11RQ9Y624 299 aaKnown RBP19.16■□□□□ 0.66
TRIM54-201ENST00000296098 M0R1W7 72 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 HTR1DP28221 377 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 PLGLAQ15195 96 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 SRSF12Q8WXF0 261 aaKnown RBP19.15■□□□□ 0.66
TRIM54-201ENST00000296098 TRGV9Q99603 122 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 PAXXQ9BUH6 204 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 TPRP12270 2363 aaKnown RBP19.15■□□□□ 0.66
TRIM54-201ENST00000296098 PLXNB1O43157 2135 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 LOC105371242A0A075B767 164 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 PAX2Q02962 417 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 LDLRAD2Q5SZI1 272 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 RUSC1-AS1Q66K80 236 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 TMEM116Q8NCL8 245 aa19.15■□□□□ 0.66
TRIM54-201ENST00000296098 ABCA4P78363 2273 aa19.14■□□□□ 0.66
TRIM54-201ENST00000296098 PYYP10082 97 aa19.14■□□□□ 0.65
TRIM54-201ENST00000296098 SFTPCP11686 197 aa19.14■□□□□ 0.65
TRIM54-201ENST00000296098 FABP4P15090 132 aa19.14■□□□□ 0.65
TRIM54-201ENST00000296098 RPL15P61313 204 aaKnown RBP19.14■□□□□ 0.65
TRIM54-201ENST00000296098 IL36BQ9NZH7 164 aa19.14■□□□□ 0.65
TRIM54-201ENST00000296098 DPM3Q9P2X0 92 aa19.14■□□□□ 0.65
TRIM54-201ENST00000296098 XKRY2A2RUG3 117 aa19.13■□□□□ 0.65
TRIM54-201ENST00000296098 PYY3Q5JQD4 70 aa19.13■□□□□ 0.65
TRIM54-201ENST00000296098 OR51M1Q9H341 326 aa19.13■□□□□ 0.65
TRIM54-201ENST00000296098 CEACAM3P40198 252 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms