RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 AANATQ16613 207 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 Q71RC1 249 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM160Q9NX00 188 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 TCF19Q9Y242 345 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF561-AS1K7EIQ3 104 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PLAC1Q9HBJ0 212 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 TRGV1A0A0A0MS02 117 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 TRBV9A0A0B4J1U6 114 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FAM223BA6NKX1 122 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 IQCF6A8MYZ5 107 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 M0R1W7 72 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 RPL36AP83881 106 aaKnown RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 PVRIGQ6DKI7 326 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 SPSB3Q6PJ21 355 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FAM223AQ8IWN6 122 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 RPL36ALQ969Q0 106 aaKnown RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 HDHD3Q9BSH5 251 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-217ENST00000637988 FUT9Q9Y231 359 aa5.17□□□□□ -1.58
SCN1A-217ENST00000637988 OOSP1A8MZH6 123 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 PGLYRP1O75594 196 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MIC13Q5XKP0 118 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 CACNG8Q8WXS5 425 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 WDFY2Q96P53 400 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 SOD3P08294 240 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 CRYBB2P43320 205 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 DMKNQ6E0U4 476 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MORN3Q6PF18 240 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR10D4PQ8NGN7 298 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 GATAD1Q8WUU5 269 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 GGACTQ9BVM4 153 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MRPL16Q9NX20 251 aaKnown RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 DTX4Q9Y2E6 619 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 SLC25A15Q9Y619 301 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 GREB1LQ9C091 1923 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 EML6Q6ZMW3 1958 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 RRHO14718 337 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 IGF2P01344 180 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MESP2Q0VG99 397 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 FAM71F2Q6NXP2 309 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF680Q8NEM1 530 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR5A1Q8NGJ0 315 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 REPIN1Q9BWE0 567 aaKnown RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 NPIPB13A6NJU9 1138 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 F5H768 121 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 VAX1Q5SQQ9 334 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MRAPQ8TCY5 172 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 WFIKKN1Q96NZ8 548 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 SLC25A2Q9BXI2 301 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 MRPL20Q9BYC9 149 aaKnown RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 NDUFB4O95168 129 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 TIAF1O95411 115 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 IGLV3-19P01714 112 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 VSIG8P0DPA2 414 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF880Q6PDB4 577 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR11H1Q8NG94 326 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR10W1Q8NGF6 305 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR11H2Q8NH07 326 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 IGKV1D-16P01601 117 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 LMO1P25800 156 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 HBBP68871 147 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 CIARTQ8N365 385 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 PRDM13Q9H4Q3 707 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 CHCHD2Q9Y6H1 151 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-217ENST00000637988 A0A1W2PR77 199 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 AMBPP02760 352 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 FOLR2P14207 255 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 FSTP19883 344 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 CYB561D1Q8N8Q1 229 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 OR10S1Q8NGN2 331 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 TMEM190Q8WZ59 177 aa5.16□□□□□ -1.58
SCN1A-217ENST00000637988 A0A0G2JMZ2 1700 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 LRRC37A2A6NM11 1700 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 TEX48A0A1B0GUV7 120 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 H3BUX3 64 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 TYMSP04818 313 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 NBEAP1P0C6P0 100 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 BCL2P10415 239 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 LINC00158P58513 81 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 PMCHL1Q16048 86 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 ZNF672Q499Z4 452 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-217ENST00000637988 DMRTA2Q96SC8 542 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 PLSCR2Q9NRY7 297 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 S4R3C0 116 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 LINC01549A6NIU2 74 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 UCP1P25874 307 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 RPL39P5Q59GN2 51 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 KLK5Q9Y337 293 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-217ENST00000637988 HMX2A2RU54 273 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 CD59P13987 128 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 FOXL2P58012 376 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 ACTL10Q5JWF8 245 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 NKAPP1Q8N9T2 125 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 NABP2Q9BQ15 211 aa5.15□□□□□ -1.58
SCN1A-217ENST00000637988 GGTLC3B5MD39 225 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 INS-IGF2F8WCM5 200 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 VENTXO95231 258 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 CD28P10747 220 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 RCC1P18754 421 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-217ENST00000637988 KIAA0040Q15053 153 aa5.15□□□□□ -1.59
SCN1A-217ENST00000637988 LIMS2Q7Z4I7 341 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms