RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 A0A0G2JRQ6 117 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 MARCH11A6NNE9 402 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 FAM90A9PA6NNJ1 464 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 TIMM23O14925 209 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 PPP1R2P9O14990 202 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 HRASP01112 189 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 KRASP01116 189 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 TMEM41BQ5BJD5 291 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 CENPVQ7Z7K6 275 aaPredicted RBP11.35□□□□□ -0.59
CLN3-242ENST00000635958 Q8WTZ3 238 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 R3HDM4Q96D70 268 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 RCC1LQ96I51 464 aaKnown RBP11.35□□□□□ -0.59
CLN3-242ENST00000635958 MEGF9Q9H1U4 602 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 SRRM4A7MD48 611 aaKnown RBP11.35□□□□□ -0.59
CLN3-242ENST00000635958 SOX15O60248 233 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 IL6RP08887 468 aaPredicted RBP11.35□□□□□ -0.59
CLN3-242ENST00000635958 G6PCP35575 357 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 LGALS7P47929 136 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 EBI3Q14213 229 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 TMEM217Q8N7C4 229 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 FAM210BQ96KR6 192 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 SDF2L1Q9HCN8 221 aa11.35□□□□□ -0.59
CLN3-242ENST00000635958 IGHV3OR16-10A0A075B7F0 116 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 IGHV3-72A0A0B4J1Y9 119 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 A0A1B0GV50 99 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 CD5LO43866 347 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 VENTXO95231 258 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 RUSC1-AS1Q66K80 236 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 BRD3OSQ6XYD6 125 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 SPNS3Q6ZMD2 512 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 Q6ZRM9 215 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 BTF3L4Q96K17 158 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 RHOVQ96L33 236 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 PFDN5Q99471 154 aa11.34□□□□□ -0.59
CLN3-242ENST00000635958 IFNA10P01566 189 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 ERVK-16P61578 105 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 FAM90A2PQ658T7 463 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 C9orf139Q6ZV77 190 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 TEX29Q8N6K0 151 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 GNG13Q9P2W3 67 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 NAT8Q9UHE5 227 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 HIVEP1P15822 2718 aa11.33□□□□□ -0.6
CLN3-242ENST00000635958 A0A0U1RQK1 487 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 ZNF727A8MUV8 499 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 TMEM250H0YL14 139 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 CYB5BO43169 146 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 IGLV2-23P01705 113 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 CXCL1P09341 107 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 RPS16P62249 146 aaKnown RBP11.32□□□□□ -0.6
CLN3-242ENST00000635958 RUNX1Q01196 453 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 AARDQ4LEZ3 155 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 FAM209BQ5JX69 171 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 H2BFWTQ7Z2G1 175 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 LILRB2Q8N423 598 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 RITA1Q96K30 269 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HARBI1Q96MB7 349 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 WDR61Q9GZS3 305 aaKnown RBP11.32□□□□□ -0.6
CLN3-242ENST00000635958 RPRMQ9NS64 109 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 PITPNC1Q9UKF7 332 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 NAV3Q8IVL0 2385 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BKO60814 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BJP06899 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BOP23527 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 BRS3P32247 399 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BBP33778 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 CEBPGP53567 150 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BDP58876 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 RAB11AP62491 216 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BCP62807 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST2H2BEQ16778 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 IZUMO4Q1ZYL8 232 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.32□□□□□ -0.6
CLN3-242ENST00000635958 OR4A47Q6IF82 309 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 VKORC1L1Q8N0U8 176 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BHQ93079 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BNQ99877 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H2BMQ99879 126 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 TMEM140Q9NV12 185 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 BET1LQ9NYM9 111 aa11.32□□□□□ -0.6
CLN3-242ENST00000635958 MOSP00540 346 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 Q8N6K4 173 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 OR2T10Q8NGZ9 312 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 EAF1Q96JC9 268 aaPredicted RBP11.31□□□□□ -0.6
CLN3-242ENST00000635958 CIB3Q96Q77 187 aaPredicted RBP11.31□□□□□ -0.6
CLN3-242ENST00000635958 MANBALQ9NQG1 85 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.31□□□□□ -0.6
CLN3-242ENST00000635958 SLC39A9Q9NUM3 307 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 CACNG5Q9UF02 275 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 TNCP24821 2201 aa11.31□□□□□ -0.6
CLN3-242ENST00000635958 YIF1AO95070 293 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 IGKV1D-33P01593 117 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 IGKV1-33P01594 117 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 CRYGBP07316 175 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 OR9G9P0C7N8 305 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 SAA1P0DJI8 122 aaPredicted RBP11.3□□□□□ -0.6
CLN3-242ENST00000635958 HIST1H1BP16401 226 aaKnown RBP11.3□□□□□ -0.6
CLN3-242ENST00000635958 RELBQ01201 579 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 CYP2G1PQ6ZSU1 146 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 SSX9Q7RTT3 188 aa11.3□□□□□ -0.6
CLN3-242ENST00000635958 HIST3H2BBQ8N257 126 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms