RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 SPINK9Q5DT21 86 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 RNASE10Q5GAN6 216 aaKnown RBP-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 SPANXN3Q5MJ09 141 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 CST9Q5W186 159 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 LPCAT4Q643R3 524 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 PFN4Q8NHR9 129 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 CNBD2Q96M20 576 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 KCTD7Q96MP8 289 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 DERL1Q9BUN8 251 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 TREM1Q9NP99 234 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 C15orf41Q9Y2V0 281 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 TNCP24821 2201 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 MEGF8Q7Z7M0 2845 aa-0.1□□□□□ -2.43
SCN1A-208ENST00000625916 TRAV12-1A0A0B4J245 112 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 A0A0D9SG42 100 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 A0A0J9YY10 115 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 A0A1B0GX78 115 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 TRPC5OSA6NMA1 111 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 ZNF736B4DX44 427 aaPredicted RBP-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 SULT1B1O43704 296 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 COX6A1P12074 109 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BOP23527 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BBP33778 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BDP58876 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BCP62807 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 RHEBQ15382 184 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 GRK1Q15835 563 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST2H2BEQ16778 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 COQ5Q5HYK3 327 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 C1orf137Q5JT78 98 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST2H2BFQ5QNW6 126 aaPredicted RBP-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 COMMD7Q86VX2 200 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 CLVS1Q8IUQ0 354 aaPredicted RBP-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 FUNDC1Q8IVP5 155 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 OR5A1Q8NGJ0 315 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 C4orf3Q8WVX3 66 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BHQ93079 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BNQ99877 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HIST1H2BMQ99879 126 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 MIXL1Q9H2W2 232 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HEATR5AQ86XA9 2040 aa-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 SNRNP200O75643 2136 aaKnown RBP-0.11□□□□□ -2.43
SCN1A-208ENST00000625916 HYDINQ4G0P3 5121 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 HIVEP1P15822 2718 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 TOPBP1Q92547 1522 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 ACOX3O15254 700 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 CCL25O15444 150 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 SSNA1O43805 119 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 LYZL6O75951 148 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 PROSCO94903 275 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 MGST1P10620 155 aaKnown RBP-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 GUK1Q16774 197 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 SPRNQ5BIV9 151 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 FAM74A1Q5RGS3 127 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 RPL22L1Q6P5R6 122 aaKnown RBP-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 MIR17HGQ75NE6 70 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 GRINAQ7Z429 371 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 SYCE1Q8N0S2 351 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 EXOC3-AS1Q8N2X6 119 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 Q8N402 240 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 DNAJC9Q8WXX5 260 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 ITFG2Q969R8 447 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 PRRT1Q99946 306 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 COMMD5Q9GZQ3 224 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 SONP18583 2426 aaKnown RBP-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 EML6Q6ZMW3 1958 aa-0.12□□□□□ -2.43
SCN1A-208ENST00000625916 MED12Q93074 2177 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 CCDC88AQ3V6T2 1871 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 MAST2Q6P0Q8 1798 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 LINC00854A0A1B0GVQ3 168 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 PQLC2LA1A4F0 135 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 F5H768 121 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 FAAHO00519 579 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 NDUFS6O75380 124 aaKnown RBP-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 OR2B3O76000 313 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 TCL1BO95988 128 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 TYMSP04818 313 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 UCHL3P15374 230 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 LINC00575Q6W349 94 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 Q6ZS49 121 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 TMEM156Q8N614 296 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 DEFB125Q8N687 156 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 C3orf56Q8N813 242 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 DNAJB3Q8WWF6 145 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 ZNF75CPQ92670 426 aaPredicted RBP-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 WDR61Q9GZS3 305 aaKnown RBP-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 TLNRD1Q9H1K6 362 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 MAP1LC3AQ9H492 121 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 TMEM14CQ9P0S9 112 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 ALPK3Q96L96 1907 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 EPPK1P58107 5090 aaKnown RBP-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 DCCP43146 1447 aa-0.13□□□□□ -2.43
SCN1A-208ENST00000625916 MCM3APO60318 1980 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 ZNF462Q96JM2 2506 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 ERICH2A1L162 156 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 IQCF5A8MTL0 148 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 PFDN6O15212 129 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 IGLV3-1P01715 115 aa-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 OCMP0CE72 109 aaPredicted RBP-0.14□□□□□ -2.43
SCN1A-208ENST00000625916 KDELR1P24390 212 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms