RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ZNF486Q96H40 463 aaPredicted RBP9.26□□□□□ -0.93
TRIM28-212ENST00000597995 ATP6V0BQ99437 205 aa9.26□□□□□ -0.93
TRIM28-212ENST00000597995 TSC22D3Q99576 134 aa9.26□□□□□ -0.93
TRIM28-212ENST00000597995 CHRDL1Q9BU40 450 aa9.26□□□□□ -0.93
TRIM28-212ENST00000597995 DAZ1Q9NQZ3 744 aaKnown RBP9.26□□□□□ -0.93
TRIM28-212ENST00000597995 FKBP11Q9NYL4 201 aa9.26□□□□□ -0.93
TRIM28-212ENST00000597995 UBQLN2Q9UHD9 624 aa9.26□□□□□ -0.93
TRIM28-212ENST00000597995 A0A0B4J293 547 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 OR2T8A6NH00 312 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 K7EMT4 169 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 RAB3DO95716 219 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 S100GP29377 79 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 TMBIM6P55061 237 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 TAS2R19P59542 299 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 ODF3L2Q3SX64 289 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 SP6Q3SY56 376 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 STEAP1BQ6NZ63 245 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 SPSB3Q6PJ21 355 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 H2BFWTQ7Z2G1 175 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 RPP25LQ8N5L8 163 aaKnown RBP9.25□□□□□ -0.93
TRIM28-212ENST00000597995 OR13C8Q8NGS7 320 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 MARCH1Q8TCQ1 289 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 C15orf40Q8WUR7 153 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 SMIM4Q8WVI0 70 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 GALNT14Q96FL9 552 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 SLIRPQ9GZT3 109 aaKnown RBP9.25□□□□□ -0.93
TRIM28-212ENST00000597995 MAP6D1Q9H9H5 199 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 C21orf62Q9NYP8 219 aa9.25□□□□□ -0.93
TRIM28-212ENST00000597995 CCDC59Q9P031 241 aaKnown RBP9.25□□□□□ -0.93
TRIM28-212ENST00000597995 A0A0G2JRQ6 117 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 C3orf85A0A1B0GTC6 90 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 OR4C46A6NHA9 309 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 I3L2K1 104 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 NDUFA4O00483 81 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 NOL3O60936 208 aaKnown RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 HSPE1P61604 102 aaKnown RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 PRCDQ00LT1 54 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 SSBP1Q04837 148 aaKnown RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 SPINK9Q5DT21 86 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 OR1P1Q8NH06 330 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 OR4A16Q8NH70 328 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 PHLDA1Q8WV24 401 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 BSCL2Q96G97 398 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 TMEM56Q96MV1 263 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 BCL7BQ9BQE9 202 aa9.24□□□□□ -0.93
TRIM28-212ENST00000597995 RTBDNQ9BSG5 229 aaPredicted RBP9.24□□□□□ -0.93
TRIM28-212ENST00000597995 H3BMQ9 156 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 CTDSPLO15194 276 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 CTSDP07339 412 aaPredicted RBP9.23□□□□□ -0.93
TRIM28-212ENST00000597995 CTSGP08311 255 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 UCP1P25874 307 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 RPL5P46777 297 aaKnown RBP9.23□□□□□ -0.93
TRIM28-212ENST00000597995 CMC4P56277 68 aaPredicted RBP9.23□□□□□ -0.93
TRIM28-212ENST00000597995 SCGB2B2Q4G0G5 96 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 Q6ZRM9 215 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 ZNF114Q8NC26 417 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 OR4C16Q8NGL9 310 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 DIRAS2Q96HU8 199 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 SOSTQ9BQB4 213 aa9.23□□□□□ -0.93
TRIM28-212ENST00000597995 C6orf62Q9GZU0 229 aaPredicted RBP9.23□□□□□ -0.93
TRIM28-212ENST00000597995 IGHV3OR16-8A0A075B7F1 116 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 C15orf62A8K5M9 175 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 ST8SIA3O43173 380 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 IGHV3-48P01763 117 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 RPL35AP18077 110 aaKnown RBP9.22□□□□□ -0.93
TRIM28-212ENST00000597995 MRPS10P82664 201 aaKnown RBP9.22□□□□□ -0.93
TRIM28-212ENST00000597995 IL18Q14116 193 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 LHFPL5Q8TAF8 219 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 ZFAND1Q8TCF1 268 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 GATAD1Q8WUU5 269 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 NXF2Q9GZY0 626 aaKnown RBP9.22□□□□□ -0.93
TRIM28-212ENST00000597995 COPZ2Q9P299 210 aa9.22□□□□□ -0.93
TRIM28-212ENST00000597995 HERC2O95714 4834 aa9.21□□□□□ -0.93
TRIM28-212ENST00000597995 GSTZ1O43708 216 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-212ENST00000597995 DEDDO75618 318 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 MT-CO2P00403 227 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 OR5AC1P0C628 307 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 FCGR2BP31994 310 aaPredicted RBP9.21□□□□□ -0.94
TRIM28-212ENST00000597995 TNFSF8P32971 234 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 MEF2DQ14814 521 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 TRIM16LQ309B1 348 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 Q56UQ5 140 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 PVRIGQ6DKI7 326 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 UBAC2Q8NBM4 344 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 GLYATL2Q8WU03 294 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 MISP3Q96FF7 219 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 C20orf24Q9BUV8 137 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 MFFQ9GZY8 342 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 CSTL1Q9H114 145 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 GPR132Q9UNW8 380 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 DNAH10Q8IVF4 4471 aa9.21□□□□□ -0.94
TRIM28-212ENST00000597995 ANKRD20A5PA0PJZ0 165 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 INS-IGF2F8WCM5 200 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 ZNF207O43670 478 aaKnown RBP9.2□□□□□ -0.94
TRIM28-212ENST00000597995 CDS2O95674 445 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 AKAIN1P0CW23 69 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 ETV6P41212 452 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 AKR1C2P52895 323 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 TCTAP57738 103 aa9.2□□□□□ -0.94
TRIM28-212ENST00000597995 CCDC71LQ8N9Z2 235 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms