RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	CGB3	P0DN86	165 aa		13.95	□□□□□ -0.18
VPS53-215	ENST00000573028	CGB7	P0DN87	165 aa		13.95	□□□□□ -0.18
VPS53-215	ENST00000573028	CHRNB4	P30926	498 aa		13.95	□□□□□ -0.18
VPS53-215	ENST00000573028	BRS3	P32247	399 aa		13.95	□□□□□ -0.18
VPS53-215	ENST00000573028	UPK2	O00526	184 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	CR1L	Q2VPA4	569 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	PLA2G2C	Q5R387	149 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	LHFPL4	Q7Z7J7	247 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	MIEN1	Q9BRT3	115 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	SPAAR	A0A1B0GVQ0	90 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	PYY	P10082	97 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	CCL8	P80075	99 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	RPL19	P84098	196 aa	Known RBP	13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	PRCD	Q00LT1	54 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	TEX43	Q6ZNM6	134 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	SEM1	Q6ZVN7	128 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	COMMD5	Q9GZQ3	224 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	POLE	Q07864	2286 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	TFPI2	P48307	235 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	TAS2R45	P59539	299 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	CX3CL1	P78423	397 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	ZNF474	Q6S9Z5	364 aa	Predicted RBP	13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	ATOH7	Q8N100	152 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	FAM168A	Q92567	244 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	ADTRP	Q96IZ2	230 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	GNB1L	Q9BYB4	327 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	NRN1	Q9NPD7	142 aa		13.94	□□□□□ -0.18
VPS53-215	ENST00000573028	TRAV9-1	A0A075B6T8	112 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	RPLP1	P05386	114 aa	Known RBP	13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	GPX1	P07203	203 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	HARBI1	Q96MB7	349 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	CHODL	Q9H9P2	273 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028		M0R296	226 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	GLRX	P35754	106 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	SSBP2	P81877	361 aa	Predicted RBP	13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	C10orf55	Q5SWW7	151 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	TMEM136	Q6ZRR5	245 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	WNT10A	Q9GZT5	417 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	SLC25A10	Q9UBX3	287 aa	Predicted RBP	13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	RPH3AL	Q9UNE2	315 aa		13.93	□□□□□ -0.18
VPS53-215	ENST00000573028	LHB	P01229	141 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	SELENOV	P59797	346 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	PPIAL4A	Q9Y536	164 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	C8orf88	P0DMB2	117 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	CFHR2	P36980	270 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028		Q0VG73	95 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	SFXN3	Q9BWM7	321 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	MRPL20	Q9BYC9	149 aa	Known RBP	13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	RAB9B	Q9NP90	201 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	ZNF355P	Q9NSJ1	428 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	CCL3L1	P16619	93 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	DEFB124	Q8NES8	71 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	GAFA1	Q96PS6	74 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	LY96	Q9Y6Y9	160 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	DMXL2	Q8TDJ6	3036 aa		13.92	□□□□□ -0.18
VPS53-215	ENST00000573028	USF1	P22415	310 aa	Predicted RBP	13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	WDR73	Q6P4I2	378 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	C20orf144	Q9BQM9	153 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	SLC25A33	Q9BSK2	321 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	ZNF331	Q9NQX6	463 aa	Predicted RBP	13.91	□□□□□ -0.18
VPS53-215	ENST00000573028		E7EUB6	86 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	RNASE2	P10153	161 aa	Known RBP	13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	FAM27E3	Q08E93	113 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	C22orf34	Q6ZV56	151 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	SLC35E1	Q96K37	410 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	TMEM68	Q96MH6	324 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028	OSTC	Q9NRP0	149 aa		13.91	□□□□□ -0.18
VPS53-215	ENST00000573028		A0A1W2PS18	150 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	BMPR1B	O00238	502 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	IGHV1-46	P01743	117 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	OR5G3	P0C626	314 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	APELA	P0DMC3	54 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	COMP	P49747	757 aa	Predicted RBP	13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	ZNF439	Q8NDP4	499 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	TMEM208	Q9BTX3	173 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	CDC42EP3	Q9UKI2	254 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	COX7A2P2	O60397	106 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	REG1A	P05451	166 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	MFAP2	P55001	183 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	TRBV9	A0A0B4J1U6	114 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	IGLV2-8	P01709	118 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	APCS	P02743	223 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	CAMP	P49913	170 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	CD69	Q07108	199 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	SPATA45	Q537H7	98 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	STUM	Q69YW2	141 aa		13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	H1FX	Q92522	213 aa	Known RBP	13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	RPUSD1	Q9UJJ7	312 aa	Known RBP	13.9	□□□□□ -0.18
VPS53-215	ENST00000573028	DMXL1	Q9Y485	3027 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	MT-ND6	P03923	174 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	AMY1A	P04745	511 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	NPS	P0C0P6	89 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	ESD	P10768	282 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	NPIPB3	Q92617	1050 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	RIF1	Q5UIP0	2472 aa	Known RBP	13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	DSCAML1	Q8TD84	2053 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	PIEZO2	Q9H5I5	2752 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028		A0A1B0GWJ7	208 aa		13.89	□□□□□ -0.19
VPS53-215	ENST00000573028	GPR6	P46095	362 aa	Predicted RBP	13.89	□□□□□ -0.19

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