RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 RPS24P62847 133 aaKnown RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 FKBP1AP62942 108 aaKnown RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 ELOCQ15369 112 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 ZNF77Q15935 545 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TAL2Q16559 108 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 CDKN3Q16667 212 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 GGTA1PQ4G0N0 100 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TSPO2Q5TGU0 170 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 Q6AWC8 147 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 LEG1Q6P5S2 330 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 RASL11AQ6T310 242 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 GLIPR1L1Q6UWM5 242 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 CYP2G1PQ6ZSU1 146 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 SSX8Q7RTT4 187 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 SGPP2Q8IWX5 399 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 ZFP62Q8NB50 900 aaPredicted RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR4X2Q8NGF9 303 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR51H1Q8NH63 302 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR10D3Q8NH80 312 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR1L1Q8NH94 360 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 C2orf15Q8WU43 125 aaKnown RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 FGF11Q92914 225 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TMEM54Q969K7 222 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 UBE2E3Q969T4 207 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 RPEQ96AT9 228 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 PELI1Q96FA3 418 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TIMD4Q96H15 378 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 SMIM3Q9BZL3 60 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 PHPT1Q9NRX4 125 aaPredicted RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 ACER3Q9NUN7 267 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TVP23BQ9NYZ1 205 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 SLC25A37Q9NYZ2 338 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 OR1A2Q9Y585 309 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 TRAPPC1Q9Y5R8 145 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 HEBP2Q9Y5Z4 205 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 V9GY05 133 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 MAST2Q6P0Q8 1798 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 PDCD11Q14690 1871 aaKnown RBP2.68□□□□□ -1.98
VPS35-203ENST00000562420 NUP98P52948 1817 aa2.68□□□□□ -1.98
VPS35-203ENST00000562420 EP400Q96L91 3159 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 IGLV4-3A0A075B6K6 122 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 IGHV3-38A0A0C4DH36 116 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 A0A1W2PPM0 123 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 OR4C45A6NMZ5 311 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 ZNF736B4DX44 427 aaPredicted RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 ZNF732B4DXR9 585 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 GGTLC3B5MD39 225 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 C9JAW5 83 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 FNDC10F2Z333 226 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 K7N7A8 449 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 SRSF10O75494 262 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 DEDDO75618 318 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 NDUFC2O95298 119 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 WISP3O95389 354 aaPredicted RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 CA2P00918 260 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 IGHG1P01857 330 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 TTRP02766 147 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 PRH1P02810 166 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 CYBAP13498 195 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 CNTFRP26992 372 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 RPL12P30050 165 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 LEPP41159 167 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 CCR2P41597 374 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 NDUFV3P56181 108 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 RPL31P62899 125 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 FKBP1BP68106 108 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 SERF2P84101 59 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 FMODQ06828 376 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 KLRB1Q12918 225 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 PAFAH1B3Q15102 231 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 TGIF1Q15583 401 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 RPEL1Q2QD12 228 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 C1orf220Q5T0J3 134 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 LYRM7Q5U5X0 104 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 COX8CQ7Z4L0 72 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 FAM19A5Q7Z5A7 132 aaPredicted RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 ZNF695Q8IW36 515 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 OSR2Q8N2R0 312 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 C10orf111Q8N326 155 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 POM121L12Q8N7R1 296 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 SUMF1Q8NBK3 374 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 OR2T33Q8NG76 320 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 OR8B12Q8NGG6 310 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 SGMS2Q8NHU3 365 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 FNDC9Q8TBE3 224 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 IL1F10Q8WWZ1 152 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 COPS9Q8WXC6 57 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 RDH5Q92781 318 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 FLYWCH2Q96CP2 140 aaKnown RBP2.67□□□□□ -1.98
VPS35-203ENST00000562420 PLEKHB2Q96CS7 222 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 SLC25A38Q96DW6 304 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 DEFB118Q96PH6 123 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 PRADC1Q9BSG0 188 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 GNB1LQ9BYB4 327 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 ULBP3Q9BZM4 244 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 OR2H1Q9GZK4 316 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 PBOV1Q9GZY1 135 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 CST11Q9H112 138 aa2.67□□□□□ -1.98
VPS35-203ENST00000562420 MANBALQ9NQG1 85 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms