RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 LHFPL4Q7Z7J7 247 aa17.17■□□□□ 0.34
TMEM260-216ENST00000557657 SCNM1Q9BWG6 230 aa17.17■□□□□ 0.34
TMEM260-216ENST00000557657 NDUFA4L2Q9NRX3 87 aa17.17■□□□□ 0.34
TMEM260-216ENST00000557657 MDFIC2A0A1B0GVS7 189 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 CRYBB3P26998 211 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 MEF2CQ06413 473 aaPredicted RBP17.16■□□□□ 0.34
TMEM260-216ENST00000557657 FAM209BQ5JX69 171 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 TEX38Q6PEX7 206 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 ANKHD1Q8IWZ3 2542 aaKnown RBP17.16■□□□□ 0.34
TMEM260-216ENST00000557657 TNFRSF13BO14836 293 aaPredicted RBP17.16■□□□□ 0.34
TMEM260-216ENST00000557657 GRNP28799 593 aaKnown RBP17.16■□□□□ 0.34
TMEM260-216ENST00000557657 KCNIP4Q6PIL6 250 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 PRO1933Q9H354 126 aa17.16■□□□□ 0.34
TMEM260-216ENST00000557657 MRPL36Q9P0J6 103 aaKnown RBP17.16■□□□□ 0.34
TMEM260-216ENST00000557657 C2orf83Q53S99 150 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 OR5B3Q8NH48 314 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 LINC01560Q8TB33 94 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 FNDC4Q9H6D8 234 aaPredicted RBP17.15■□□□□ 0.34
TMEM260-216ENST00000557657 DMRT1Q9Y5R6 373 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 SLC25A17O43808 307 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 LRRC10Q5BKY1 277 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 OSR1Q8TAX0 266 aaPredicted RBP17.15■□□□□ 0.34
TMEM260-216ENST00000557657 ZNF430Q9H8G1 570 aaPredicted RBP17.15■□□□□ 0.34
TMEM260-216ENST00000557657 ZNF835Q9Y2P0 537 aa17.15■□□□□ 0.34
TMEM260-216ENST00000557657 RPL15P61313 204 aaKnown RBP17.14■□□□□ 0.33
TMEM260-216ENST00000557657 CD69Q07108 199 aa17.14■□□□□ 0.33
TMEM260-216ENST00000557657 UHRF2Q96PU4 802 aa17.14■□□□□ 0.33
TMEM260-216ENST00000557657 IMMP2LQ96T52 175 aa17.14■□□□□ 0.33
TMEM260-216ENST00000557657 PFDN5Q99471 154 aa17.14■□□□□ 0.33
TMEM260-216ENST00000557657 HRNRQ86YZ3 2850 aaPredicted RBP17.14■□□□□ 0.33
TMEM260-216ENST00000557657 ENSAO43768 121 aaKnown RBP17.13■□□□□ 0.33
TMEM260-216ENST00000557657 IGLV2-23P01705 113 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 TYMSP04818 313 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 ZNF90Q03938 601 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 OR10G8Q8NGN5 311 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 TRAPPC1Q9Y5R8 145 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 GGTLC3B5MD39 225 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 NDUFS6O75380 124 aaKnown RBP17.13■□□□□ 0.33
TMEM260-216ENST00000557657 HIST1H1BP16401 226 aaKnown RBP17.13■□□□□ 0.33
TMEM260-216ENST00000557657 CNTFRP26992 372 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 TMEM177Q53S58 311 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 UNQ6494/PRO21346Q6UXR6 183 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 C11orf42Q8N5U0 333 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 ST6GALNAC6Q969X2 333 aa17.13■□□□□ 0.33
TMEM260-216ENST00000557657 DLX6P56179 175 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 OR1L8Q8NGR8 309 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 IGHV3-21A0A0B4J1V1 117 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 NUPR1O60356 82 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 TMEM256Q8N2U0 113 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 OR4C13Q8NGP0 309 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 FKBP11Q9NYL4 201 aa17.12■□□□□ 0.33
TMEM260-216ENST00000557657 ARHGAP32A7KAX9 2087 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.11■□□□□ 0.33
TMEM260-216ENST00000557657 SPINK4O60575 86 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 CD99P14209 185 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 IGFBPL1Q8WX77 278 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 EAF1Q96JC9 268 aaPredicted RBP17.11■□□□□ 0.33
TMEM260-216ENST00000557657 GRIFINA4D1Z8 144 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 CBLN1P23435 193 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 SUMO1P63165 101 aaKnown RBP17.11■□□□□ 0.33
TMEM260-216ENST00000557657 CENPWQ5EE01 88 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 HCP5Q6MZN7 132 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 PQLC2Q6ZP29 291 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 NPIPB3Q92617 1050 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 LINC00479Q96M42 142 aa17.11■□□□□ 0.33
TMEM260-216ENST00000557657 PYYP10082 97 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 TMEM30BQ3MIR4 351 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 TGIF2LXQ8IUE1 241 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 NHLRC2Q8NBF2 726 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 IGHV1-69-2A0A0G2JMI3 117 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 FAM90A27PA6NNH2 459 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 LY6HO94772 140 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 IGHV1-8P0DP01 117 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 LCN2P80188 198 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 ERHP84090 104 aaKnown RBP17.1■□□□□ 0.33
TMEM260-216ENST00000557657 FOXL1Q12952 345 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 MRGPRG-AS1Q2M3A8 158 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 TXNDC17Q9BRA2 123 aa17.1■□□□□ 0.33
TMEM260-216ENST00000557657 RNASE7Q9H1E1 156 aaKnown RBP17.1■□□□□ 0.33
TMEM260-216ENST00000557657 COL6A6A6NMZ7 2263 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 SPTBN4Q9H254 2564 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 MT-CO2P00403 227 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 GZMBP10144 247 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 ADMP35318 185 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 CNN1P51911 297 aaKnown RBP17.09■□□□□ 0.33
TMEM260-216ENST00000557657 FXYD3Q14802 87 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 TMEM155Q4W5P6 130 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 TMEM167AQ8TBQ9 72 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 C11orf52Q96A22 123 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 SLC35E1Q96K37 410 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 TECRQ9NZ01 308 aaKnown RBP17.09■□□□□ 0.33
TMEM260-216ENST00000557657 A0A1W2PPI3 338 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 FNDC10F2Z333 226 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 DLL1O00548 723 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 SLC35B1P78383 322 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 SLC25A33Q9BSK2 321 aa17.09■□□□□ 0.33
TMEM260-216ENST00000557657 OR5G3P0C626 314 aa17.08■□□□□ 0.33
TMEM260-216ENST00000557657 USF1P22415 310 aaPredicted RBP17.08■□□□□ 0.33
TMEM260-216ENST00000557657 COA6Q5JTJ3 125 aaKnown RBP17.08■□□□□ 0.33
TMEM260-216ENST00000557657 WASHC3Q9Y3C0 194 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms