RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 UXS1Q8NBZ7 420 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 ZNF114Q8NC26 417 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 ZNF502Q8TBZ5 544 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 VN1R17PQ8TDU5 208 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 SCARB1Q8WTV0 552 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 CCDC140Q96MF4 163 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 SEC22CQ9BRL7 303 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 C21orf62Q9NYP8 219 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 KLK9Q9UKQ9 250 aa8.8□□□□□ -1
CCDC88C-212ENST00000556767 INS-IGF2F8WCM5 200 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 BMPR1BO00238 502 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 SAP30O75446 220 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 OR2C1O95371 312 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 MT-CO2P00403 227 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 IGHV3-48P01763 117 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 RNASE2P10153 161 aaKnown RBP8.79□□□□□ -1
CCDC88C-212ENST00000556767 DEFA6Q01524 100 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 TNFRSF9Q07011 255 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 BEAN1Q3B7T3 259 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 PLET1Q6UQ28 207 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 NRARPQ7Z6K4 114 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 SLC24A4Q8NFF2 622 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 OR4C12Q96R67 309 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 ELOVL1Q9BW60 279 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 RBKSQ9H477 322 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 HSPB7Q9UBY9 170 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 MGAM2Q2M2H8 2515 aa8.79□□□□□ -1
CCDC88C-212ENST00000556767 ZNF320A2RRD8 509 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 OR2T8A6NH00 312 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 K7EIM0 57 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 CORTO00230 105 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 IFNA10P01566 189 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 PRB2P02812 416 aaPredicted RBP8.78□□□□□ -1
CCDC88C-212ENST00000556767 SLC25A6P12236 298 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 OPRK1P41145 380 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 HTR2BP41595 481 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 KLF5Q13887 457 aaPredicted RBP8.78□□□□□ -1
CCDC88C-212ENST00000556767 PDLIM3Q53GG5 364 aaPredicted RBP8.78□□□□□ -1
CCDC88C-212ENST00000556767 C11orf87Q6NUJ2 197 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 ACSM6Q6P461 480 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 DTD1Q8TEA8 209 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 ZNF431Q8TF32 576 aaPredicted RBP8.78□□□□□ -1
CCDC88C-212ENST00000556767 MITD1Q8WV92 249 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 MAGT1Q9H0U3 335 aa8.78□□□□□ -1
CCDC88C-212ENST00000556767 NOTCH3Q9UM47 2321 aa8.77□□□□□ -1
CCDC88C-212ENST00000556767 IGHV3-35A0A0C4DH35 117 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 FAM25EA8MYX2 175 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 I3L2K1 104 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 TGOLN2O43493 480 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 PITX3O75364 302 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 MED6O75586 246 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 IAPPP10997 89 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 MFAP4P55083 255 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 C12orf45Q8N5I9 185 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 DUSP18Q8NEJ0 188 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 OR9G4Q8NGQ1 327 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 GPN1Q9HCN4 374 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 GSKIPQ9P0R6 139 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 PEMTQ9UBM1 199 aa8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 PAIP2BQ9ULR5 123 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-212ENST00000556767 MPTX1A8MV57 137 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 FAM90A26D6RGX4 464 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 INMT-MINDY4F8WBC2 141 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 WRBO00258 174 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 CCSO14618 274 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 GNG7O60262 68 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 SCGB1D2O95969 90 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 NPY1RP25929 384 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 IAH1Q2TAA2 248 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 FAM106AQ4KMX7 169 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 NOXA1Q86UR1 476 aa8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 BSCL2Q96G97 398 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 GAR1Q9NY12 217 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-212ENST00000556767 RPS10-NUDT3A0A1W2PQS6 291 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 C5orf51A6NDU8 294 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 NUPL2O15504 423 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 SYNGR2O43760 224 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 IFNA4P05014 189 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 IL5P05113 134 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 NKX2-1P43699 371 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 NPBWR1P48145 328 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 INSL3P51460 131 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 MLANAQ16655 118 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 BSXQ3C1V8 233 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 C2orf83Q53S99 150 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 KPRPQ5T749 579 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 HAPLN4Q86UW8 402 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 GPHB5Q86YW7 130 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 OR10C1Q96KK4 312 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 CIB3Q96Q77 187 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 TXN2Q99757 166 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 ZMAT5Q9UDW3 170 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 U3KQ87 197 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 TRRAPQ9Y4A5 3859 aa8.75□□□□□ -1.01
CCDC88C-212ENST00000556767 F8W735 103 aaPredicted RBP8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 YIF1AO95070 293 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 LY86O95711 162 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 KRTAP10-11P60412 298 aa8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 POLR2GP62487 172 aaKnown RBP eCLIP8.74□□□□□ -1.01
CCDC88C-212ENST00000556767 PVRIGQ6DKI7 326 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms