RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 TRAV9-1A0A075B6T8 112 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 A0A0G2JK05 382 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 FABP5P3A8MUU1 101 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 CTHRC1Q96CG8 243 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 A0A0G2JLM5 398 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 CCL3L1P16619 93 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 FXYD7P58549 80 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 PLPPR1Q8TBJ4 325 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 ZNF479Q96JC4 524 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BKO60814 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BJP06899 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BOP23527 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BBP33778 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BDP58876 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BCP62807 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST2H2BEQ16778 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BHQ93079 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BNQ99877 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 HIST1H2BMQ99879 126 aa12.94□□□□□ -0.34
CHD4-210ENST00000544040 NHSQ6T4R5 1651 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 A0A0G2JMM0 328 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 A0A1W2PPB8 328 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 A0A1W2PRS3 328 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 KIR3DP1A8MWS1 328 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 RNF126Q9BV68 326 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 CRIM1Q9NZV1 1036 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 C1orf53Q5VUE5 145 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 GTSCR1Q86UQ5 136 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 GATD1Q8NB37 220 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 ALS2Q96Q42 1657 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 CD33P20138 364 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 LINC00158P58513 81 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 ZNF837Q96EG3 531 aaPredicted RBP12.93□□□□□ -0.34
CHD4-210ENST00000544040 ZNF48Q96MX3 618 aaPredicted RBP12.93□□□□□ -0.34
CHD4-210ENST00000544040 EPDR1Q9UM22 224 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 GGTLC3B5MD39 225 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 TM4SF5O14894 197 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 GAGE13Q4V321 117 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 VSIRQ9H7M9 311 aa12.93□□□□□ -0.34
CHD4-210ENST00000544040 IGKV1D-13A0A0B4J2D9 117 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 IGKV1-13P0DP09 117 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 OCC1Q8TAD7 63 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 OTOFQ9HC10 1997 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 UMODP07911 640 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 CCL20P78556 96 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 EIF4EBP2Q13542 120 aaPredicted RBP12.92□□□□□ -0.34
CHD4-210ENST00000544040 C3orf36Q3SXR2 165 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 ANKRD31Q8N7Z5 1873 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.92□□□□□ -0.34
CHD4-210ENST00000544040 YAE1D1Q9NRH1 226 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 COLCA1Q6ZS62 124 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 IGHV3-73A0A0B4J1V6 119 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 M0R2P5 195 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 CYSLTR1Q9Y271 337 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 TMEM167AQ8TBQ9 72 aa12.92□□□□□ -0.34
CHD4-210ENST00000544040 SCN8AQ9UQD0 1980 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 GLRXP35754 106 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 ZNF415Q09FC8 603 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 WFDC1Q9HC57 220 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 C7orf69Q9H7B7 122 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 LY75O60449 1722 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 A0A087WV48 116 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 TRAV5A0A0B4J249 113 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 IGHV2OR16-5A0A0B4J2B6 119 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 S100A7L2Q5SY68 101 aa12.91□□□□□ -0.34
CHD4-210ENST00000544040 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.9□□□□□ -0.34
CHD4-210ENST00000544040 TRGV4A0A0C4DH28 118 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 PSG7Q13046 419 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 PSG8Q9UQ74 426 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 KIAA0100Q14667 2235 aaKnown RBP12.9□□□□□ -0.34
CHD4-210ENST00000544040 NAPSAO96009 420 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 CHCHD2Q9Y6H1 151 aaPredicted RBP12.9□□□□□ -0.34
CHD4-210ENST00000544040 PLNP26678 52 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ATXN8Q156A1 80 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ZNF562Q6V9R5 426 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 NCR2O95944 276 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 CDKN1AP38936 164 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 TMEM249Q2WGJ8 235 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ASCL2Q99929 193 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ADARB2-AS1A8MUL3 147 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 UPK2O00526 184 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ZXDCQ2QGD7 858 aaPredicted RBP12.9□□□□□ -0.34
CHD4-210ENST00000544040 C11orf44Q8N8P7 122 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 CACNG8Q8WXS5 425 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 CST9LQ9H4G1 147 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 ERG28Q9UKR5 140 aa12.9□□□□□ -0.34
CHD4-210ENST00000544040 OCIAD2Q56VL3 154 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 GFRA3O60609 400 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 IGHV1-2P23083 117 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 SLC25A28Q96A46 364 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 RNF125Q96EQ8 232 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 ABCA3Q99758 1704 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 CRPP02741 224 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 ZFAND6Q6FIF0 208 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 HIST1H2BLQ99880 126 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 PEMTQ9UBM1 199 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 ZNF688P0C7X2 276 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 PPP1R32Q7Z5V6 425 aa12.89□□□□□ -0.35
CHD4-210ENST00000544040 CXCL1P09341 107 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms