RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 OR52B4Q8NGK2 314 aa11.57□□□□□ -0.56
CPSF1-208ENST00000532560 OR4A16Q8NH70 328 aa11.57□□□□□ -0.56
CPSF1-208ENST00000532560 SCARB1Q8WTV0 552 aa11.57□□□□□ -0.56
CPSF1-208ENST00000532560 DLX4Q92988 240 aaPredicted RBP11.57□□□□□ -0.56
CPSF1-208ENST00000532560 LSM10Q969L4 123 aaKnown RBP11.57□□□□□ -0.56
CPSF1-208ENST00000532560 FANCD2OSQ96PS1 177 aa11.57□□□□□ -0.56
CPSF1-208ENST00000532560 CITED4Q96RK1 184 aa11.57□□□□□ -0.56
CPSF1-208ENST00000532560 PEF1Q9UBV8 284 aaKnown RBP11.57□□□□□ -0.56
CPSF1-208ENST00000532560 A0A0B4J2A0 478 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 DBX1A6NMT0 343 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 DEFA4P12838 97 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 M6PRP20645 277 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 INSL3P51460 131 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 WT1-ASQ06250 92 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 DHRS2Q13268 280 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 SLC51BQ86UW2 128 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 MITD1Q8WV92 249 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 TMEM230Q96A57 120 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 TMEM56Q96MV1 263 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 SHPKQ9UHJ6 478 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 FBXL7Q9UJT9 491 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 DNAH3Q8TD57 4116 aa11.56□□□□□ -0.56
CPSF1-208ENST00000532560 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.55□□□□□ -0.56
CPSF1-208ENST00000532560 CDS2O95674 445 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 TRBV12-3P01733 135 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 OR13C7P0DN81 318 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 KRTAP10-11P60412 298 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 CYCSP99999 105 aaKnown RBP11.55□□□□□ -0.56
CPSF1-208ENST00000532560 OR2F1Q13607 317 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 GSG1LQ6UXU4 331 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 TMED4Q7Z7H5 227 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 ZNF429Q86V71 674 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 COMMD7Q86VX2 200 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 SGPP2Q8IWX5 399 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 GLYATL2Q8WU03 294 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 RBPMSQ93062 196 aaKnown RBP11.55□□□□□ -0.56
CPSF1-208ENST00000532560 GALNT14Q96FL9 552 aa11.55□□□□□ -0.56
CPSF1-208ENST00000532560 AURKAIP1Q9NWT8 199 aaPredicted RBP11.55□□□□□ -0.56
CPSF1-208ENST00000532560 ZMAT5Q9UDW3 170 aaKnown RBP11.55□□□□□ -0.56
CPSF1-208ENST00000532560 ARPC5O15511 151 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 CYB5BO43169 146 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 NDUFB8O95169 186 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 HLA-AP01891 365 aaKnown RBP11.54□□□□□ -0.56
CPSF1-208ENST00000532560 PRB2P02812 416 aaPredicted RBP11.54□□□□□ -0.56
CPSF1-208ENST00000532560 HSPE1P61604 102 aaKnown RBP11.54□□□□□ -0.56
CPSF1-208ENST00000532560 PRCDQ00LT1 54 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 ACSM6Q6P461 480 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 FAM219AQ8IW50 185 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 LHFPL5Q8TAF8 219 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 RRNAD1Q96FB5 475 aaKnown RBP11.54□□□□□ -0.56
CPSF1-208ENST00000532560 CCDC140Q96MF4 163 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 HINT2Q9BX68 163 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 MFFQ9GZY8 342 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 DMRT1Q9Y5R6 373 aa11.54□□□□□ -0.56
CPSF1-208ENST00000532560 FXYD6-FXYD2A0A087WZ82 144 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 C9orf170A2RU37 121 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 BMPR1BO00238 502 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 KLF5Q13887 457 aaPredicted RBP11.53□□□□□ -0.56
CPSF1-208ENST00000532560 IZUMO4Q1ZYL8 232 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 KCNRGQ8N5I3 272 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 RNASE11Q8TAA1 199 aaKnown RBP11.53□□□□□ -0.56
CPSF1-208ENST00000532560 IL22RA2Q969J5 263 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 EEF1AKMT3Q96AZ1 226 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 PHYHIPLQ96FC7 376 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 CXorf58Q96LI9 332 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 ARL6Q9H0F7 186 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 THYN1Q9P016 225 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 KCNIP3Q9Y2W7 256 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 F11RQ9Y624 299 aaKnown RBP11.53□□□□□ -0.56
CPSF1-208ENST00000532560 TMEM56-RWDD3S4R434 201 aa11.53□□□□□ -0.56
CPSF1-208ENST00000532560 A0A0G2JRQ6 117 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 CFDP00746 253 aaPredicted RBP11.52□□□□□ -0.57
CPSF1-208ENST00000532560 SUPT4H1P63272 117 aaKnown RBP11.52□□□□□ -0.57
CPSF1-208ENST00000532560 TMEM187Q14656 261 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 RPEL1Q2QD12 228 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 TMEM128Q5BJH2 165 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 TOR2AQ5JU69 321 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 ZNF546Q86UE3 836 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 SELENOHQ8IZQ5 122 aaKnown RBP11.52□□□□□ -0.57
CPSF1-208ENST00000532560 OR2C3Q8N628 320 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 ZNF114Q8NC26 417 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 OR1L6Q8NGR2 347 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 SLC25A32Q9H2D1 315 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 PLEKHA3Q9HB20 300 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 PFDN2Q9UHV9 154 aa11.52□□□□□ -0.57
CPSF1-208ENST00000532560 TRBV7-1A0A0A6YYK4 115 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 MFSD2BA6NFX1 497 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 INS-IGF2F8WCM5 200 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 ST8SIA3O43173 380 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 SAP30O75446 220 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 SIX6O95475 246 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 AKR1C4P17516 323 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 MFAP2P55001 183 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 SYNJ2BPP57105 145 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 AARDQ4LEZ3 155 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 TMEM268Q5VZI3 342 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 C11orf87Q6NUJ2 197 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 EIF4E3Q8N5X7 224 aaKnown RBP11.51□□□□□ -0.57
CPSF1-208ENST00000532560 OR1P1Q8NH06 330 aa11.51□□□□□ -0.57
CPSF1-208ENST00000532560 ZNF502Q8TBZ5 544 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms