RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 TMUB1Q9BVT8 246 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 GNB1LQ9BYB4 327 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 METRNQ9UJH8 293 aa7.42□□□□□ -1.22
LIMCH1-218ENST00000513024 FOXH1O75593 365 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 IGKCP01834 107 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 RBM3P98179 157 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 C20orf144Q9BQM9 153 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 SF3B5Q9BWJ5 86 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 SMPXQ9UHP9 88 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 RNF115Q9Y4L5 304 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 IGHV3OR15-7A0A075B7D8 119 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 RNF222A6NCQ9 220 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 NPIPB4C9JG80 1138 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 RAMP3O60896 148 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 CCL3P10147 92 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 AQP3Q92482 292 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 IFI27L1Q96BM0 104 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 TMEM56-RWDD3S4R434 201 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 A0A1W2PRE2 83 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 PSMB11A5LHX3 300 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 VWC2LB2RUY7 222 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 K7N7A8 449 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 SYNGR3O43761 229 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 SS18L1O75177 396 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 LEPP41159 167 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 GUSBP1Q15486 140 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 PRSS53Q2L4Q9 553 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 FGFRL1Q8N441 504 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 STPG3Q8N7X2 389 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 ZSWIM8A7E2V4 1837 aa7.41□□□□□ -1.22
LIMCH1-218ENST00000513024 CLDN14O95500 239 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 NCR2O95944 276 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 C1orf100Q5SVJ3 147 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 PPP1R27Q86WC6 154 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 C9orf40Q8IXQ3 194 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 FSCN3Q9NQT6 498 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 LINC01559Q495D7 138 aa7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 RPP21Q9H633 154 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 DICER1Q9UPY3 1922 aaKnown RBP7.4□□□□□ -1.22
LIMCH1-218ENST00000513024 FAM231BA6NCW3 169 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 HIGD1CA8MV81 97 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 MOSP00540 346 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 SRSF3P84103 164 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 PSG9Q00887 426 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 LINC00596Q86U02 117 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 C9JAW5 83 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 FGF16O43320 207 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 PGLYRP1O75594 196 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 DXOO77932 396 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 OR2H2O95918 312 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 CXCL1P09341 107 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 TDGF1P13385 188 aa7.4□□□□□ -1.23
LIMCH1-218ENST00000513024 TRBV5-7A0A0A0MS05 114 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 F8W1H4 67 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 CD5P06127 495 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 FBXW9Q5XUX1 488 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 GGTLC1Q9BX51 225 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 SPTBN2O15020 2390 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV3D-15A0A087WSY6 115 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 TRAV24A0A0B4J272 114 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 A0A1W2PQF6 199 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 PEX7O00628 323 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV3-15P01624 115 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 PEBP1P30086 187 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 MAGEA5P43359 124 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 INO80CQ6PI98 192 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 SRSF8Q9BRL6 282 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 LOC285556D6RIA3 1793 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 J3KT08 172 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 FOXS1O43638 330 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 LIFP15018 202 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 ICAM4Q14773 271 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 C16orf92Q96LL3 132 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 TMEM126AQ9H061 195 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 SCO2A0A1W2PP80 73 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 H3BTX0 84 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 SPINT1O43278 529 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 FAM74A4Q5TZK3 123 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 MDP1Q86V88 176 aa7.39□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV3D-11A0A0A0MRZ8 115 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 H7C1H1 209 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 ZG16O60844 167 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV3-11P04433 115 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 RND2P52198 227 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 PSG4Q00888 419 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 HCP5Q6MZN7 132 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 EAF1Q96JC9 268 aaPredicted RBP7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 CSTL1Q9H114 145 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 NGFRP08138 427 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 C3orf79P0CE67 100 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 FGF12P61328 243 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 EBLN2Q6P2I7 272 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 MRPL55Q7Z7F7 128 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 SAP25Q8TEE9 199 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 OSTCQ9NRP0 149 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 RNF7Q9UBF6 113 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 ABCA7Q8IZY2 2146 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 HEATR1Q9H583 2144 aaKnown RBP7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 IGKV3OR2-268A0A0C4DH90 116 aa7.38□□□□□ -1.23
LIMCH1-218ENST00000513024 RPL27AP46776 148 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms