RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 RNF222A6NCQ9 220 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 FAM90A27PA6NNH2 459 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 PF4V1P10720 104 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 TRA2AQ13595 282 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL5A1-201ENST00000371817 XIRP1Q702N8 1843 aaKnown RBP12.98□□□□□ -0.33
COL5A1-201ENST00000371817 TNRC6CQ9HCJ0 1690 aaKnown RBP12.98□□□□□ -0.33
COL5A1-201ENST00000371817 CD5LO43866 347 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 UPK3AO75631 287 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 ZP4Q12836 540 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 ZIC1Q15915 447 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 PCSK4Q6UW60 755 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 DENND4AQ7Z401 1863 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 STRCP1A6NGW2 1772 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 LAGE3Q14657 143 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 PMVKQ15126 192 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 Q9H3A6 140 aa12.98□□□□□ -0.33
COL5A1-201ENST00000371817 GGTLC1Q9BX51 225 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 LINC01549A6NIU2 74 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 SEPSECSQ9HD40 501 aaKnown RBP12.97□□□□□ -0.33
COL5A1-201ENST00000371817 SIPA1L3O60292 1781 aaPredicted RBP12.97□□□□□ -0.33
COL5A1-201ENST00000371817 LAMTOR3Q9UHA4 124 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 SF3B6Q9Y3B4 125 aaKnown RBP12.97□□□□□ -0.33
COL5A1-201ENST00000371817 TRAV14DV4A0A0A6YYC5 116 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 FAM90A2PQ658T7 463 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 TMEM74BQ9NUR3 256 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 NCOA6Q14686 2063 aaPredicted RBP12.97□□□□□ -0.33
COL5A1-201ENST00000371817 IGHV3-72A0A0B4J1Y9 119 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 THY1P04216 161 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 ATP5G2Q06055 141 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 GAGE1Q13065 139 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 RASL11AQ6T310 242 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 AGFG2O95081 481 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 GAGE2AQ6NT46 116 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 VN1R4Q7Z5H5 301 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 TEX45Q8NA69 505 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 DLL3Q9NYJ7 618 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 PAX1P15863 534 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 ACTL10Q5JWF8 245 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 EEF1AKMT3Q96AZ1 226 aa12.97□□□□□ -0.33
COL5A1-201ENST00000371817 CXCL1P09341 107 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 CTGFP29279 349 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 ZNF664Q8N3J9 261 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 DRAM1Q8N682 238 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 MED13Q9UHV7 2174 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 F8VVB4 439 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 F8VWA3 439 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 TMEM30BQ3MIR4 351 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 RTN4RL2Q86UN3 420 aa12.96□□□□□ -0.33
COL5A1-201ENST00000371817 NYNRINQ9P2P1 1898 aaKnown RBP12.96□□□□□ -0.33
COL5A1-201ENST00000371817 FOXL1Q12952 345 aa12.96□□□□□ -0.34
COL5A1-201ENST00000371817 TMEM258P61165 79 aa12.96□□□□□ -0.34
COL5A1-201ENST00000371817 COL16A1Q07092 1604 aaPredicted RBP12.96□□□□□ -0.34
COL5A1-201ENST00000371817 SCN10AQ9Y5Y9 1956 aa12.96□□□□□ -0.34
COL5A1-201ENST00000371817 H3BMM0 161 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 UBE2WQ96B02 151 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 CDK2AP2O75956 126 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 RSPO2Q6UXX9 243 aaPredicted RBP12.95□□□□□ -0.34
COL5A1-201ENST00000371817 IGFBP2P18065 325 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 PEAR1Q5VY43 1037 aaPredicted RBP12.95□□□□□ -0.34
COL5A1-201ENST00000371817 DUX5Q96PT3 197 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 COL22A1Q8NFW1 1626 aaPredicted RBP12.95□□□□□ -0.34
COL5A1-201ENST00000371817 C9orf172C9J069 976 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 NPIPB11E5RHQ5 1161 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 CD5P06127 495 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 EVI2AP22794 236 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 TSPAN7P41732 249 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 hDV102S1A0JD36 115 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 F8W1H4 67 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 IDI2-AS1Q9NZ38 188 aa12.95□□□□□ -0.34
COL5A1-201ENST00000371817 C9JAW5 83 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 ZNF688P0C7X2 276 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 LDLRAD1Q5T700 205 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 ASCL2Q99929 193 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 IGKV3-20P01619 116 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 TIMP3P35625 211 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 TMEM42Q69YG0 159 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 PTCRAQ6ISU1 281 aaPredicted RBP12.94□□□□□ -0.34
COL5A1-201ENST00000371817 CCL13Q99616 98 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 R4GN57 208 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 HCFC1P51610 2035 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 SHISA7A6NL88 538 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 DXOO77932 396 aaKnown RBP12.94□□□□□ -0.34
COL5A1-201ENST00000371817 KLF17Q5JT82 389 aaPredicted RBP12.94□□□□□ -0.34
COL5A1-201ENST00000371817 CRIM1Q9NZV1 1036 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 JPT1Q9UK76 154 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 C1QAP02745 245 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 VEGFBP49765 207 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 HRKO00198 91 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 LIFP15018 202 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 ASPHD2Q6ICH7 369 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 STRCQ7RTU9 1775 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 ACACAQ13085 2346 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 PSG4Q00888 419 aa12.94□□□□□ -0.34
COL5A1-201ENST00000371817 RALGAPA2Q2PPJ7 1873 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 TRBV20-1A0A075B6N2 111 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 GFRA3O60609 400 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 F2Z2F3 143 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 RHOGP84095 191 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 UCP2P55851 309 aa12.93□□□□□ -0.34
COL5A1-201ENST00000371817 GTSCR1Q86UQ5 136 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms