RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DOCK10Q96BY6 2186 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 A0A1B0GXF2 115 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 J3QR06 171 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 CD5LO43866 347 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 IGHV3-13P01766 116 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 IGHV3-7P01780 117 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 C12orf54Q6X4T0 127 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 CHTOPQ9Y3Y2 248 aaKnown RBP5.55□□□□□ -1.52
VPS39-202ENST00000348544 SELENOKQ9Y6D0 94 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 FAM186AA6NE01 2351 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 PCSK5Q92824 1860 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 TRAV5A0A0B4J249 113 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 A0A1W2PRE2 83 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 C15orf61A6NNL5 157 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 HIGD1CA8MV81 97 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 NBEAP1P0C6P0 100 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 FOXA3P55318 350 aaPredicted RBP5.55□□□□□ -1.52
VPS39-202ENST00000348544 RAB31Q13636 194 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 C2orf91Q6ZV80 131 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 FAM231DQ6ZW35 169 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 FAM90A1Q86YD7 464 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 WFDC8Q8IUA0 241 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 SMRP1Q8NCR6 262 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 SMIM12Q96EX1 92 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 GRAMD2BQ96HH9 432 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 OR2V2Q96R30 315 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 C7orf69Q9H7B7 122 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 PLEKHA3Q9HB20 300 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 DUSP13Q9UII6 198 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 RPH3ALQ9UNE2 315 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 LOXL2Q9Y4K0 774 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 CACNA1EQ15878 2313 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 CELSR3Q9NYQ7 3312 aa5.55□□□□□ -1.52
VPS39-202ENST00000348544 CEP290O15078 2479 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SMPD2O60906 423 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 HLA-DRB1P01911 266 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 CCL4P13236 92 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 REG1BP48304 166 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 ZNF134P52741 427 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 ERVK-16P61578 105 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 C3AR1Q16581 482 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 UFSP1Q6NVU6 142 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 TRAT1Q6PIZ9 186 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 C16orf54Q6UWD8 224 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 ACP7Q6ZNF0 438 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SSX8Q7RTT4 187 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SLC25A40Q8TBP6 338 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 FAM167A-AS1Q96KT0 104 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 TRIB1Q96RU8 372 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 HIST1H1AQ02539 215 aaPredicted RBP5.54□□□□□ -1.52
VPS39-202ENST00000348544 MLANAQ16655 118 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SPINK14Q6IE38 97 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 LHFPL4Q7Z7J7 247 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SPEM1Q8N4L4 309 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 FER1L6-AS1Q8NA97 138 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 DDB2Q92466 427 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 JMJD8Q96S16 334 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 PMCHL2Q9BQD1 86 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 SLC25A33Q9BSK2 321 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 IFI27L2Q9H2X8 130 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 IDI2-AS1Q9NZ38 188 aa5.54□□□□□ -1.52
VPS39-202ENST00000348544 C7orf71A4D174 169 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 LEPROTL1O95214 131 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 MPV17P39210 176 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 HSPE1P61604 102 aaKnown RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 EDDM3AQ14507 147 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 VWA1Q6PCB0 445 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 TCF24Q7RTU0 167 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 PPP1R32Q7Z5V6 425 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 OR1B1Q8NGR6 318 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 OR9G1Q8NH87 305 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 PRR7Q8TB68 274 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 HINT2Q9BX68 163 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 SLC25A2Q9BXI2 301 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 HES7Q9BYE0 225 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 C12orf49Q9H741 205 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 TMEM14BQ9NUH8 114 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 PEF1Q9UBV8 284 aaKnown RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 FOXA2Q9Y261 457 aaPredicted RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 KLF13Q9Y2Y9 288 aaPredicted RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 PSMB11A5LHX3 300 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 FAM231BA6NCW3 169 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 SPINT2O43291 252 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 CER1O95813 267 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 ADH4P08319 380 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 C8orf88P0DMB2 117 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 PYYP10082 97 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 GPR183P32249 361 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 UBE2L3P68036 154 aaKnown RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 PLGLB1Q02325 96 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 IL11RAQ14626 422 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 WDR82Q6UXN9 313 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 CD177Q8N6Q3 437 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 S1PR3Q99500 378 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 GNG12Q9UBI6 72 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 AMMECR1Q9Y4X0 333 aaPredicted RBP5.53□□□□□ -1.52
VPS39-202ENST00000348544 DNAJC13O75165 2243 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 VPS13AQ96RL7 3174 aa5.53□□□□□ -1.52
VPS39-202ENST00000348544 IQCF6A8MYZ5 107 aa5.52□□□□□ -1.53
VPS39-202ENST00000348544 FNDC10F2Z333 226 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms