RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 ABCA4P78363 2273 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 USF1P22415 310 aaPredicted RBP12.48□□□□□ -0.41
UPF3B-202ENST00000345865 GRNP28799 593 aaKnown RBP12.48□□□□□ -0.41
UPF3B-202ENST00000345865 APOBEC3AP31941 199 aaPredicted RBP12.48□□□□□ -0.41
UPF3B-202ENST00000345865 ZNF137PP52743 207 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 MORN5Q5VZ52 161 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 PDPNQ86YL7 162 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 C8orf31Q8N9H6 132 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 FNDC4Q9H6D8 234 aaPredicted RBP12.48□□□□□ -0.41
UPF3B-202ENST00000345865 NGBQ9NPG2 151 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 IGF2RP11717 2491 aa12.48□□□□□ -0.41
UPF3B-202ENST00000345865 A0A087X0M5 115 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 A0A1B0GX30 115 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 ATP5IP56385 69 aaPredicted RBP12.47□□□□□ -0.41
UPF3B-202ENST00000345865 HLA-DRB5Q30154 266 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 TEX38Q6PEX7 206 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 TMEM183AQ8IXX5 376 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 C11orf52Q96A22 123 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 CSMD1Q96PZ7 3565 aa12.47□□□□□ -0.41
UPF3B-202ENST00000345865 IGHV3-72A0A0B4J1Y9 119 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 SIAH2O43255 324 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 IGHV3-48P01763 117 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 RD3LP0DJH9 198 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 RPL15P61313 204 aaKnown RBP12.46□□□□□ -0.41
UPF3B-202ENST00000345865 FAM71F2Q6NXP2 309 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 KCNIP4Q6PIL6 250 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 SGMS2Q8NHU3 365 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 ACY3Q96HD9 319 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 WASHC3Q9Y3C0 194 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 NBASA2RRP1 2371 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 PSMB11A5LHX3 300 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 INS-IGF2F8WCM5 200 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 DLL1O00548 723 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 SLC25A17O43808 307 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 OR5G3P0C626 314 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 LCN2P80188 198 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 ERHP84090 104 aaKnown RBP12.46□□□□□ -0.41
UPF3B-202ENST00000345865 FOXL1Q12952 345 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 TGIF2LXQ8IUE1 241 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 OR1P1Q8NH06 330 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 SLC35E1Q96K37 410 aa12.46□□□□□ -0.41
UPF3B-202ENST00000345865 MRPL36Q9P0J6 103 aaKnown RBP12.46□□□□□ -0.41
UPF3B-202ENST00000345865 XKRY2A2RUG3 117 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 MT-CO2P00403 227 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 OR10J4P0C629 311 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 AREGP15514 252 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 RBPJQ06330 500 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 COA6Q5JTJ3 125 aaKnown RBP12.45□□□□□ -0.42
UPF3B-202ENST00000345865 PACRGQ96M98 296 aaPredicted RBP12.45□□□□□ -0.42
UPF3B-202ENST00000345865 ANKHD1Q8IWZ3 2542 aaKnown RBP12.45□□□□□ -0.42
UPF3B-202ENST00000345865 A0A0U1RQK1 487 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 MDFIC2A0A1B0GVS7 189 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 ZNF320A2RRD8 509 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 CD3EP07766 207 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 RUSC1-AS1Q66K80 236 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 CACNG8Q8WXS5 425 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 IMMP2LQ96T52 175 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 SLC25A33Q9BSK2 321 aa12.45□□□□□ -0.42
UPF3B-202ENST00000345865 TECRQ9NZ01 308 aaKnown RBP12.45□□□□□ -0.42
UPF3B-202ENST00000345865 TRBV23-1A0A0A0MS06 115 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 TRAV5A0A0B4J249 113 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 GGTLC3B5MD39 225 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 B9A039 149 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 OR7C2O60412 319 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 AMBPP02760 352 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 REG1AP05451 166 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 CRYBB3P26998 211 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 GPX4P36969 197 aaPredicted RBP12.44□□□□□ -0.42
UPF3B-202ENST00000345865 OR4A5Q8NH83 315 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 VSTM2AQ8TAG5 236 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 TMEM133Q9H2Q1 129 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 ATRXP46100 2492 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 IGKV1D-37A0A075B6S9 117 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 A0A1W2PPI3 338 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 SLC17A3O00476 420 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 CDSNQ15517 529 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 ZNF841Q6ZN19 808 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 PNKDQ8N490 385 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 OR10G8Q8NGN5 311 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 EAF1Q96JC9 268 aaPredicted RBP12.44□□□□□ -0.42
UPF3B-202ENST00000345865 FAM167A-AS1Q96KT0 104 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 UHRF2Q96PU4 802 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 PRDM13Q9H4Q3 707 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 TMEM167BQ9NRX6 74 aa12.44□□□□□ -0.42
UPF3B-202ENST00000345865 HRNRQ86YZ3 2850 aaPredicted RBP12.44□□□□□ -0.42
UPF3B-202ENST00000345865 A0A1W2PN81 502 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 FAM90A27PA6NNH2 459 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 CNTFRP26992 372 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 PPOXP50336 477 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 PDLIM4P50479 330 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 ZNF90Q03938 601 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 OR5I1Q13606 314 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 NPIPB3Q92617 1050 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 DMRT1Q9Y5R6 373 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 C9JCJ5 164 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 ENSAO43768 121 aaKnown RBP12.43□□□□□ -0.42
UPF3B-202ENST00000345865 PQLC2Q6ZP29 291 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 C19orf35Q6ZS72 473 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 SLC25A2Q9BXI2 301 aa12.43□□□□□ -0.42
UPF3B-202ENST00000345865 SVEP1Q4LDE5 3571 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms