RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZIC4Q8N9L1 334 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 OR9G4Q8NGQ1 327 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 TCF23Q7RTU1 214 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 C8orf46Q8TAG6 207 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 TRAV2A0A0B4J234 112 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 TRAV40A0A0B4J280 105 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 UMODP07911 640 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 FMC1Q96HJ9 113 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 TDRD15B5MCY1 1934 aaKnown RBP10.59□□□□□ -0.71
SDC3-201ENST00000336798 RP1P56715 2156 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 A0A1B0GUT8 65 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 IGHMP01871 453 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 FOXD3Q9UJU5 478 aaPredicted RBP10.59□□□□□ -0.71
SDC3-201ENST00000336798 LRP5O75197 1615 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 TMEM14DPA8MWL7 114 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 WISP3O95389 354 aaPredicted RBP10.59□□□□□ -0.71
SDC3-201ENST00000336798 METRNQ9UJH8 293 aa10.59□□□□□ -0.71
SDC3-201ENST00000336798 SAA2-SAA4A0A096LPE2 208 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 SAA2P0DJI9 122 aaPredicted RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 EFNB1P98172 346 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 PAX2Q02962 417 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 SRSF7Q16629 238 aaKnown RBP eCLIP10.58□□□□□ -0.72
SDC3-201ENST00000336798 VCX2Q9H322 139 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 IL36BQ9NZH7 164 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 TMEM219Q86XT9 240 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 OSR1Q8TAX0 266 aaPredicted RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 SDHCQ99643 169 aaPredicted RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 SAP30O75446 220 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 LINC01590Q5TEZ4 76 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 CHCHD5Q9BSY4 110 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 SMIM10L1P0DMW3 83 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 SMIM10Q96HG1 83 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 VKORC1Q9BQB6 163 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 SCN8AQ9UQD0 1980 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 RPL35AP18077 110 aaKnown RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 PHLDA1Q8WV24 401 aaPredicted RBP10.58□□□□□ -0.72
SDC3-201ENST00000336798 ST20Q9HBF5 79 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 PLSCR4Q9NRQ2 329 aa10.58□□□□□ -0.72
SDC3-201ENST00000336798 NPDC1Q9NQX5 325 aaPredicted RBP10.57□□□□□ -0.72
SDC3-201ENST00000336798 A0A1W2PR77 199 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 C17orf100A8MU93 164 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 HIGD1CA8MV81 97 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 IGHV3-53P01767 116 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 ZNF48Q96MX3 618 aaPredicted RBP10.57□□□□□ -0.72
SDC3-201ENST00000336798 PRSS22Q9GZN4 317 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 TRAV14DV4A0A0A6YYC5 116 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 NBR2O15453 112 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 ASCL4Q6XD76 172 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 RTN4RL2Q86UN3 420 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 A0A0G2JK05 382 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 CD8AP01732 235 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 RHOGP84095 191 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 FAM181AQ8N9Y4 354 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 TNFRSF14Q92956 283 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 SVILO95425 2214 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 PYYP10082 97 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 ERVK11-1P61568 191 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 PLPPR1Q8TBJ4 325 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 NEUROG1Q92886 237 aa10.57□□□□□ -0.72
SDC3-201ENST00000336798 TM4SF5O14894 197 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 CD55P08174 381 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 ZNF688P0C7X2 276 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 CD28P10747 220 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 CA7P43166 264 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 QSER1Q2KHR3 1735 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 ESDP10768 282 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 PAX1P15863 534 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 PSMG4Q5JS54 123 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 GREM1O60565 184 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 WDYHV1Q96HA8 205 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 RSPO3Q9BXY4 272 aaPredicted RBP10.56□□□□□ -0.72
SDC3-201ENST00000336798 IFI27P40305 119 aaPredicted RBP10.56□□□□□ -0.72
SDC3-201ENST00000336798 RAMP3O60896 148 aa10.56□□□□□ -0.72
SDC3-201ENST00000336798 ADARB2-AS1A8MUL3 147 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 CTHRC1Q96CG8 243 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 ZNF318Q5VUA4 2279 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 CEACAM1P13688 526 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 LINC00158P58513 81 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 TMEM30BQ3MIR4 351 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 ORMDL3Q8N138 153 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 GDF15Q99988 308 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 ZNF257Q9Y2Q1 563 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 THBDP07204 575 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 CASP8AP2Q9UKL3 1982 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 C19orf67A6NJJ6 358 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 ZFAND6Q6FIF0 208 aa10.55□□□□□ -0.72
SDC3-201ENST00000336798 TGFBR3LH3BV60 316 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 HBDP02042 147 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 KLRD1Q13241 179 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 ANKRD31Q8N7Z5 1873 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 PSCAO43653 123 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 TBX6O95947 436 aaPredicted RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 SEPSECSQ9HD40 501 aaKnown RBP10.54□□□□□ -0.72
SDC3-201ENST00000336798 DEPPQ9NTK1 212 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 SLC25A15Q9Y619 301 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 CKAP5Q14008 2032 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 S100A7L2Q5SY68 101 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 TMEM105Q8N8V8 129 aa10.54□□□□□ -0.72
SDC3-201ENST00000336798 CST9LQ9H4G1 147 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms