RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LAGE3Q14657 143 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 SLC25A53Q5H9E4 307 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 CLEC2AQ6UVW9 174 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 SLC50A1Q9BRV3 221 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM74BQ9NUR3 256 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 DLL3Q9NYJ7 618 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 FAM90A27PA6NNH2 459 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 RIPPLY3P57055 190 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 PMVKQ15126 192 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 SLC25A47Q6Q0C1 308 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 CT55Q8WUE5 264 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 MYEOVQ96EZ4 313 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 A0A1W2PRE2 83 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 REG1BP48304 166 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 PLAUP00749 431 aa12.14□□□□□ -0.47
COL7A1-201ENST00000328333 SIRT4Q9Y6E7 314 aaPredicted RBP12.14□□□□□ -0.47
COL7A1-201ENST00000328333 A0A1B0GTI1 187 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 GAGE12BA1L429 117 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 AHRRA9YTQ3 701 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 ICAM4Q14773 271 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 GUSBP11Q6P575 273 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 FAM214BQ7L5A3 538 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 HIST3H2BBQ8N257 126 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 OR52E5Q8NH55 327 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 TRAV24A0A0B4J272 114 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 DLEU1O43261 78 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 PSG4Q00888 419 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 IGHV3OR15-7A0A075B7D8 119 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 C19orf48Q6RUI8 117 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 UCN2Q96RP3 112 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 SSBP3Q9BWW4 388 aaPredicted RBP12.13□□□□□ -0.47
COL7A1-201ENST00000328333 IGLV1-36A0A0B4J1U3 117 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 ASCL4Q6XD76 172 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 NPFFR1Q9GZQ6 430 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 MYOD1P15172 320 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 TRBV20-1A0A075B6N2 111 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 RAMP1O60894 148 aa12.13□□□□□ -0.47
COL7A1-201ENST00000328333 IL6RP08887 468 aaPredicted RBP12.13□□□□□ -0.47
COL7A1-201ENST00000328333 MALP21145 153 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 C1orf185Q5T7R7 199 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 UNQ5815/PRO19632Q6UWF5 114 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 ERG28Q9UKR5 140 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 PSMB11A5LHX3 300 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 IGHV4-39P01824 125 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 NUP210Q8TEM1 1887 aaPredicted RBP12.12□□□□□ -0.47
COL7A1-201ENST00000328333 C9JCJ5 164 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 FAM19A2Q8N3H0 131 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 TSKUQ8WUA8 353 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 ZNF688P0C7X2 276 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 KLF12Q9Y4X4 402 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 CCDC168Q8NDH2 2452 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 TRAV21A0A0B4J279 112 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 OR9G9P0C7N8 305 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM240Q5SV17 173 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 ASPHD2Q6ICH7 369 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 ZPLD1Q8TCW7 415 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 SEPSECSQ9HD40 501 aaKnown RBP12.12□□□□□ -0.47
COL7A1-201ENST00000328333 KIAA1549LQ6ZVL6 1849 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 PRSS53Q2L4Q9 553 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 C2orf16Q68DN1 1984 aa12.12□□□□□ -0.47
COL7A1-201ENST00000328333 MOSP00540 346 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 M0R381 172 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 UCNP55089 124 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 RFLNBQ8N5W9 214 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM171Q8WVE6 324 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 WNT2BQ93097 391 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 A0A1W2PPV9 198 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 VKORC1Q9BQB6 163 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 MRPL27Q9P0M9 148 aaKnown RBP12.11□□□□□ -0.47
COL7A1-201ENST00000328333 TRAV5A0A0B4J249 113 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 DRD3P35462 400 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 CCL3P10147 92 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 DCAF10Q5QP82 559 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 SPRED2Q7Z698 418 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 OR5P3Q8WZ94 311 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 IFI27L2Q9H2X8 130 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 FBLN5Q9UBX5 448 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 CHTOPQ9Y3Y2 248 aaKnown RBP12.11□□□□□ -0.47
COL7A1-201ENST00000328333 CD5P06127 495 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 RPL23P62829 140 aaKnown RBP12.11□□□□□ -0.47
COL7A1-201ENST00000328333 ACTL10Q5JWF8 245 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 Q9H3A6 140 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 C2CD3Q4AC94 2353 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 SCO2A0A1W2PP80 73 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 DTX2Q86UW9 622 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 AGMATQ9BSE5 352 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 LY96Q9Y6Y9 160 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 TIMP3P35625 211 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 OR10W1Q8NGF6 305 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 PIMREGQ9BSJ6 248 aa12.11□□□□□ -0.47
COL7A1-201ENST00000328333 PVRIGQ6DKI7 326 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 FAM166AQ6J272 317 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 CD160O95971 181 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 CGAP01215 116 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 CHAC1Q9BUX1 264 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 C3AR1Q16581 482 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 TMEM42Q69YG0 159 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 BHLHA9Q7RTU4 235 aa12.1□□□□□ -0.47
COL7A1-201ENST00000328333 KLF17Q5JT82 389 aaPredicted RBP12.1□□□□□ -0.47
COL7A1-201ENST00000328333 IGHV3-21A0A0B4J1V1 117 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms