RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CELA2AP08217 269 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 SLC25A1P53007 311 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF252P-AS1Q0IIN9 211 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 ZP4Q12836 540 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 TNFSF15O95150 251 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 UBE2BP63146 152 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 METRNLQ641Q3 311 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 IP6K3Q96PC2 410 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 RREB1Q92766 1687 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 ARFGEF2Q9Y6D5 1785 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 TEX48A0A1B0GUV7 120 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 MANSC4A6NHS7 340 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 MSCO60682 206 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 NPSP0C0P6 89 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 C1orf162Q8NEQ5 155 aaPredicted RBP6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 FGF14Q92915 247 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 CTHRC1Q96CG8 243 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 LYZL4Q96KX0 146 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 ANKRD12Q6UB98 2062 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 LOC105371267A0A1B0GV96 52 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 HIGD1CA8MV81 97 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 PTGESO14684 152 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 CD160O95971 181 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 FKBP1CQ5VVH2 108 aa6.45□□□□□ -1.38
LIMCH1-201ENST00000313860 H3BT86 120 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 C8orf88P0DMB2 117 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 RPL23P62829 140 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 LAGE3Q14657 143 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM166AQ6J272 317 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 GAFA1Q96PS6 74 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 ASCL2Q99929 193 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 GDF15Q99988 308 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 C5P01031 1676 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 SCO2A0A1W2PP80 73 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 IZUMO1RA6ND01 250 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 FGFRL1Q8N441 504 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 CD177Q8N6Q3 437 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 NTN5Q8WTR8 489 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 TAF15Q92804 592 aaKnown RBP eCLIP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 LEAP2Q969E1 77 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 C10orf71Q711Q0 1435 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 IGHV1-3A0A0C4DH29 117 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 K7EP13 123 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 NDUFV3P56181 108 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 RPL31P62899 125 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 ZXDCQ2QGD7 858 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 ZMAT4Q9H898 229 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 TCRBV5S2A0A599 114 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 SMIM9A6NGZ8 99 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 SLC48A1Q6P1K1 146 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 RHNO1Q9BSD3 238 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 SHISA8B8ZZ34 492 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 RPL8P62917 257 aaKnown RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 PRSS57Q6UWY2 283 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 SYS1Q8N2H4 156 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 STPG4Q8N801 248 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 TEX45Q8NA69 505 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 CLDND2Q8NHS1 167 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 OSR1Q8TAX0 266 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 ST8SIA1Q92185 356 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 KCNE3Q9Y6H6 103 aa6.44□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM236DA0A1B0GTK5 79 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A1B0GUS0 222 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 EDIL3O43854 480 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 TIMM17BO60830 172 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 PDCD6O75340 191 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM236CP0DP71 79 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 DEFB121Q5J5C9 76 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 ARIH2OSQ8N7S6 290 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 OR51G1Q8NGK1 321 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 C10orf35Q96D05 121 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 V9GYH0 126 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 DKK1O94907 266 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 AMBPP02760 352 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 BAALC-AS2P0C853 105 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 FAM106CPP0CH98 169 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF79Q15937 498 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 TJP1Q07157 1748 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 HIST2H2BCQ6DN03 193 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 HIST2H2BDQ6DRA6 164 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 SARAFQ96BY9 339 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 RNASE7Q9H1E1 156 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 F8W1H4 67 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 CRYGSP22914 178 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 PDLIM5Q96HC4 596 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 DSPPQ9NZW4 1301 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 IGHV7-4-1A0A0J9YVY3 117 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 A0A1W2PRE2 83 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 EFEMP2O95967 443 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 C1QAP02745 245 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 RPL15P61313 204 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 SS18Q15532 418 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF488Q96MN9 340 aa6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 CSDC2Q9Y534 153 aaKnown RBP6.43□□□□□ -1.38
LIMCH1-201ENST00000313860 SMIM35A0A1B0GVV1 85 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 OR9G9P0C7N8 305 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 ZNF876PQ49A33 203 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 DOCK2Q92608 1830 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 M0R1W7 72 aa6.42□□□□□ -1.38
LIMCH1-201ENST00000313860 AGFG2O95081 481 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms