RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.92□□□□□ -1.14
CUX1-201ENST00000292535 PLA2G10O15496 165 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 PLNP26678 52 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 IL11P20809 199 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 S100A7L2Q5SY68 101 aa7.92□□□□□ -1.14
CUX1-201ENST00000292535 F12P00748 615 aaPredicted RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 ICAM4Q14773 271 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 MS4A3Q96HJ5 214 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 FBXL7Q9UJT9 491 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 DTX4Q9Y2E6 619 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 IGHV3-66A0A0C4DH42 116 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 C1QL1O75973 258 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 ZNF501Q96CX3 271 aaPredicted RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 TRBV5-3A0A0A0MS03 114 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 TRBV5-7A0A0A0MS05 114 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 LINC01549A6NIU2 74 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 ERGP11308 486 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 C2orf68Q2NKX9 166 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 C8orf82Q6P1X6 216 aaPredicted RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 SELENOHQ8IZQ5 122 aaKnown RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 PCDH15Q96QU1 1955 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 PPBPP02775 128 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 CIARTQ8N365 385 aaPredicted RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 NRTNQ99748 197 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 C7orf69Q9H7B7 122 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 NDUFA3O95167 84 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 SNRPCP09234 159 aaKnown RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 CDCP2Q5VXM1 449 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 IGHV3OR16-13A0A075B7E8 117 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 IGHV3-74A0A0B4J1X5 117 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 GRIFINA4D1Z8 144 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 H0YL77 283 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 TMEM86BQ8N661 226 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 OR5P3Q8WZ94 311 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 SEPSECSQ9HD40 501 aaKnown RBP7.91□□□□□ -1.14
CUX1-201ENST00000292535 TRAV24A0A0B4J272 114 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 CENPVL1A0A0U1RR11 272 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 OR10J3Q5JRS4 329 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 F8WEM9 126 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 CD7P09564 240 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 PCOLCEQ15113 449 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 TMEM54Q969K7 222 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 TRAV21A0A0B4J279 112 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 OR13A1Q8NGR1 328 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 C1QTNF5Q9BXJ0 243 aa7.91□□□□□ -1.14
CUX1-201ENST00000292535 NABP2Q9BQ15 211 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 NAT1P18440 290 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 IZUMO1RA6ND01 250 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 FER1L6-AS1Q8NA97 138 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 OR52E5Q8NH55 327 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 EML5Q05BV3 1969 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 TRAV8-2A0A0B4J237 113 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 LINC00587B1AMM8 73 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 IFI27L2Q9H2X8 130 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 DRAM1Q8N682 238 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 SBF2Q86WG5 1849 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 Q9H3A6 140 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 LINC00312Q9Y6C7 94 aa7.9□□□□□ -1.14
CUX1-201ENST00000292535 MORN3Q6PF18 240 aaPredicted RBP7.9□□□□□ -1.15
CUX1-201ENST00000292535 CLEC19AQ6UXS0 136 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 RND3P61587 244 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 DMRTA2Q96SC8 542 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 FBXL15Q9H469 300 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 MGAMO43451 1857 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 LINC01559Q495D7 138 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 MDKP21741 143 aaPredicted RBP7.9□□□□□ -1.15
CUX1-201ENST00000292535 DMRT1Q9Y5R6 373 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 SPCS1Q9Y6A9 102 aa7.9□□□□□ -1.15
CUX1-201ENST00000292535 CA1P00915 261 aaPredicted RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 TBR1Q16650 682 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 RPL39P5Q59GN2 51 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 ZNRF1Q8ND25 227 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 GPR132Q9UNW8 380 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 TRAV9-1A0A075B6T8 112 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 TRGV4A0A0C4DH28 118 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 MIXL1Q9H2W2 232 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 LY75O60449 1722 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 TTC9CQ8N5M4 171 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 RNASE6Q93091 150 aaKnown RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 ST20Q9HBF5 79 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 TBL2Q9Y4P3 447 aaKnown RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 LOC101059948A0A1B0GTJ6 334 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 FAM219BQ5XKK7 198 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 PVRIGQ6DKI7 326 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 GLI3P10071 1580 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 FAM71F2Q6NXP2 309 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 RCC1LQ96I51 464 aaKnown RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 RBM38Q9H0Z9 239 aaKnown RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 ADAMTSL1Q8N6G6 1762 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 H3BTX0 84 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 GZMMP51124 257 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 PCNX3Q9H6A9 2034 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 DUSP14O95147 198 aaKnown RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 IGHV3-23P01764 117 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 FHITP49789 147 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 BSPH1Q075Z2 132 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 ZNF660Q6AZW8 331 aaPredicted RBP7.89□□□□□ -1.15
CUX1-201ENST00000292535 CBLN1P23435 193 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 IGHV3-35A0A0C4DH35 117 aa7.89□□□□□ -1.15
CUX1-201ENST00000292535 IQCF6A8MYZ5 107 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms