RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 IGHV1-8P0DP01 117 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 WT1-ASQ06250 92 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 ACY3Q96HD9 319 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 ZNF430Q9H8G1 570 aaPredicted RBP16.23■□□□□ 0.19
VPS53-201ENST00000291074 FUT9Q9Y231 359 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 A0A1B0GV90 55 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 USF1P22415 310 aaPredicted RBP16.23■□□□□ 0.19
VPS53-201ENST00000291074 SSBP2P81877 361 aaPredicted RBP16.23■□□□□ 0.19
VPS53-201ENST00000291074 PSG5Q15238 335 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 PDPNQ86YL7 162 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 TGIF2LXQ8IUE1 241 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 LINC00311Q8N616 119 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 TMEM167AQ8TBQ9 72 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 ZNF596Q8TC21 504 aa16.23■□□□□ 0.19
VPS53-201ENST00000291074 SLC25A17O43808 307 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 GGCTO75223 188 aaKnown RBP16.22■□□□□ 0.19
VPS53-201ENST00000291074 TXNDC17Q9BRA2 123 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 WASHC3Q9Y3C0 194 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 SIAH2O43255 324 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 PRSS8Q16651 343 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 OCC1Q8TAD7 63 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 ZNF503Q96F45 646 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 ELOA3CA0A087WX78 387 aaPredicted RBP16.22■□□□□ 0.19
VPS53-201ENST00000291074 FABP4P15090 132 aa16.22■□□□□ 0.19
VPS53-201ENST00000291074 SRP14P37108 136 aaKnown RBP16.22■□□□□ 0.19
VPS53-201ENST00000291074 ERHP84090 104 aaKnown RBP16.22■□□□□ 0.19
VPS53-201ENST00000291074 B9A039 149 aa16.21■□□□□ 0.19
VPS53-201ENST00000291074 DLL1O00548 723 aa16.21■□□□□ 0.19
VPS53-201ENST00000291074 SFRP2Q96HF1 295 aa16.21■□□□□ 0.19
VPS53-201ENST00000291074 ENSAO43768 121 aaKnown RBP16.21■□□□□ 0.18
VPS53-201ENST00000291074 REG1AP05451 166 aa16.21■□□□□ 0.18
VPS53-201ENST00000291074 IL3RAP26951 378 aa16.21■□□□□ 0.18
VPS53-201ENST00000291074 A0A0U1RQK1 487 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 OR10J4P0C629 311 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 FAM71F2Q6NXP2 309 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 C8orf31Q8N9H6 132 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 TMEM37Q8WXS4 190 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 SLC35E1Q96K37 410 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 TMEM133Q9H2Q1 129 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 FNDC4Q9H6D8 234 aaPredicted RBP16.2■□□□□ 0.18
VPS53-201ENST00000291074 A0A087X0M5 115 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 MDFIC2A0A1B0GVS7 189 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 A0A1B0GX30 115 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 OR7C2O60412 319 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 MT-CO2P00403 227 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 CDSNQ15517 529 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 MORN5Q5VZ52 161 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 KCNIP4Q6PIL6 250 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 RAXQ9Y2V3 346 aa16.2■□□□□ 0.18
VPS53-201ENST00000291074 K7EN84 100 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 CD99P14209 185 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 ZNF137PP52743 207 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 DEFA6Q01524 100 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 VSTM2AQ8TAG5 236 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 COL25A1Q9BXS0 654 aaPredicted RBP16.19■□□□□ 0.18
VPS53-201ENST00000291074 SPTBN4Q9H254 2564 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 ATP5IP56385 69 aaPredicted RBP16.19■□□□□ 0.18
VPS53-201ENST00000291074 MUC15Q8N387 334 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 DMRT1Q9Y5R6 373 aa16.19■□□□□ 0.18
VPS53-201ENST00000291074 MRGPRG-AS1Q2M3A8 158 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 SGMS2Q8NHU3 365 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 TECRQ9NZ01 308 aaKnown RBP16.18■□□□□ 0.18
VPS53-201ENST00000291074 MRPL36Q9P0J6 103 aaKnown RBP16.18■□□□□ 0.18
VPS53-201ENST00000291074 PITPNC1Q9UKF7 332 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 MSRB2Q9Y3D2 182 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 HRNRQ86YZ3 2850 aaPredicted RBP16.18■□□□□ 0.18
VPS53-201ENST00000291074 OR5G3P0C626 314 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 CNTFRP26992 372 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 HLA-DRB5Q30154 266 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 ACTL10Q5JWF8 245 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 TEX38Q6PEX7 206 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 C11orf52Q96A22 123 aa16.18■□□□□ 0.18
VPS53-201ENST00000291074 TRAV5A0A0B4J249 113 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 A0A1W2PN81 502 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 A0A1W2PPI3 338 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 CCL21O00585 134 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 TYMSP04818 313 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 APELAP0DMC3 54 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 CA7P43166 264 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 PPOXP50336 477 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 OR4A5Q8NH83 315 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 UHRF2Q96PU4 802 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 HIST1H2BLQ99880 126 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 ARHGAP32A7KAX9 2087 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 ZNF320A2RRD8 509 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 UNQ6494/PRO21346Q6UXR6 183 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 C19orf35Q6ZS72 473 aa16.17■□□□□ 0.18
VPS53-201ENST00000291074 RALYQ9UKM9 306 aaKnown RBP16.17■□□□□ 0.18
VPS53-201ENST00000291074 IGHV2-26A0A0B4J1V2 119 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 XKRY2A2RUG3 117 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 CRYBB3P26998 211 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 CASP6P55212 293 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 VMA21Q3ZAQ7 101 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 CACNG8Q8WXS5 425 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 COL6A6A6NMZ7 2263 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 INS-IGF2F8WCM5 200 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 LY6HO94772 140 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 ZNF90Q03938 601 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 ZNF841Q6ZN19 808 aa16.16■□□□□ 0.18
VPS53-201ENST00000291074 TMEM183AQ8IXX5 376 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms